Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13e03
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    27   2.3  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    27   3.0  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    26   5.2  
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual    26   5.2  
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.9  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   6.9  
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    25   9.1  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    25   9.1  

>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = -1

Query: 563  NTNITLYLLLCSAIGSLTVVFCKAVALGIKEFVTSGVNNLVNFYF---WLLIVSAIICIM 393
            N N+ +YL    AI  L  ++ ++V  G+ + V  G + L +       ++ VSA +CI+
Sbjct: 813  NNNLHVYLTRHPAISLLEALYTESVYSGLFDLVEYGFDQLEDVSVPKTIVITVSASLCIL 872

Query: 392  LQMNYLNKSL 363
              +  L + L
Sbjct: 873  RNVLSLQRVL 882


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +1

Query: 466 TNSFMPKATALQNTTVKLPIAEHSNK--YKVIFVFPNFWHKHYFDYKSTL 609
           +N+F  ++   Q   + LPI     +  YK+   F N W   YF Y +TL
Sbjct: 26  SNAFGKESLRFQLRELILPIVRKETRLLYKIQSFFRNPWLDVYFMYTATL 75


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 202 KIAVITI-KKPQTHPKISSAVMCSHSRNKIPDEIITKTVNIT*YTGVTILVLNMSRD 369
           KIA + I + P+T      A+   HS  K+ D I+        Y G+ I+ L+M ++
Sbjct: 50  KIAAVEILENPRTPNSSFEALYILHSEEKLVDCILKDEEYDKRYPGIHIVFLDMVKE 106


>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 491 VALGIKEFVTSGVNNLVNFYFWLLIVSAIICIMLQMNYLNKSLDIFNTS-IVTPV 330
           + L  K  +  G+  L+ FYF  L  + I+     +  +NK++  FN   ++TPV
Sbjct: 64  IDLTYKLCLLCGIVTLLLFYFSGLYRTTIVYPSRYVQQVNKAMRFFNIRLVITPV 118


>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 454 TPEVTNSFMPKATALQNTTVKLPIAEHSNKYKV 552
           +P       P++  ++N  +K PI+ H  KY +
Sbjct: 123 SPRALRYLSPESQRIKNAKMKSPISTHLAKYSI 155


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 369 FV*VIHL*HNAYNCTYNE 422
           FV ++ L H AY+CT NE
Sbjct: 267 FVAILSLSHEAYHCTENE 284


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -1

Query: 548 LYLLLCSAIGSLTVVFCKAVALGIKEFVTSGVNNLVNFYFWLLIVSA 408
           ++LL  S++  L+  F   +  GIK   T  +  L+  ++W+L V+A
Sbjct: 162 VFLLTHSSLFMLSENFSFILNNGIKATSTKVLFGLLGLWWWMLFVTA 208


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 306 SDNFIWYFISRMGTHDC*RYLRVCLWFFNSDDSNFH 199
           +DN +   I  +   D   YL +  W F+SD+++F+
Sbjct: 269 ADNTVASLIHALPPKDITFYLLMTFWQFSSDNNHFY 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,211,774
Number of Sequences: 5004
Number of extensions: 41513
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)