Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13e03
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1398 - 29867458-29867582,29868460-29868577,29868665-298687... 131 4e-31
05_04_0402 - 20991628-20991755,20992461-20992578,20992670-209927... 126 1e-29
05_04_0366 - 20663243-20663388,20663467-20663572,20664275-206643... 126 1e-29
01_06_1567 + 38293612-38293795,38294467-38294523,38294609-382946... 126 2e-29
04_03_0632 + 18200844-18200970,18201134-18201190,18201370-182014... 124 6e-29
01_06_1512 + 37881055-37881229,37881388-37881444,37881537-378816... 124 8e-29
11_01_0607 - 4837257-4837447,4837526-4837631,4837913-4838005,483... 123 1e-28
05_06_0058 + 25258532-25258685,25258767-25258823,25258923-252590... 56 2e-08
01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920... 30 1.8
06_03_0268 - 18975814-18976065,18978180-18978215 29 4.1
>06_03_1398 -
29867458-29867582,29868460-29868577,29868665-29868757,
29868980-29869117,29869193-29869320,29869417-29869577,
29869683-29869773,29869858-29869914,29870654-29870777
Length = 344
Score = 131 bits (317), Expect = 4e-31
Identities = 57/131 (43%), Positives = 89/131 (67%)
Frame = -1
Query: 572 KXGNTNITLYLLLCSAIGSLTVVFCKAVALGIKEFVTSGVNNLVNFYFWLLIVSAIICIM 393
+ G TNI +YL +CS++GSLTVV KA+ + IK G+N + + WL ++ AIIC++
Sbjct: 167 RYGQTNIMIYLGICSSMGSLTVVSIKAIGVAIK-LTLDGMNQVAYPHTWLFVIIAIICVV 225
Query: 392 LQMNYLNKSLDIFNTSIVTPVYYVMFTVLVIISSGILFREWEHMTAEDILGCVCGFLIVM 213
Q+NYLNK+LD F+ ++V+P+YYVMFT L I++SGI+F++W + I CG + ++
Sbjct: 226 SQINYLNKALDTFDLAVVSPIYYVMFTTLTIVASGIMFKDWAGQSFSSIASEFCGLITIL 285
Query: 212 TAIFMLNAFKD 180
T ML+ K+
Sbjct: 286 TGTIMLHTAKE 296
>05_04_0402 -
20991628-20991755,20992461-20992578,20992670-20992762,
20992841-20992978,20993070-20993197,20993270-20993430,
20993548-20993638,20993731-20993787,20993986-20994139
Length = 355
Score = 126 bits (304), Expect = 1e-29
Identities = 56/131 (42%), Positives = 86/131 (65%)
Frame = -1
Query: 572 KXGNTNITLYLLLCSAIGSLTVVFCKAVALGIKEFVTSGVNNLVNFYFWLLIVSAIICIM 393
+ G TNI +Y+ +CS IGSLTV+ KAV + IK G+N F WL + ICI+
Sbjct: 177 RYGQTNIAVYIGICSVIGSLTVMSIKAVGIAIK-LTIEGINQAGYFQTWLFATVSAICII 235
Query: 392 LQMNYLNKSLDIFNTSIVTPVYYVMFTVLVIISSGILFREWEHMTAEDILGCVCGFLIVM 213
+Q+ YLNK+LD FNT++V+P+YY MFT L I++S I+F++W + I +CGFL V+
Sbjct: 236 IQLIYLNKALDTFNTAVVSPIYYAMFTSLTILASAIMFKDWSGQSISSIASEICGFLTVL 295
Query: 212 TAIFMLNAFKD 180
+ +L++ ++
Sbjct: 296 SGTVVLHSTRE 306
>05_04_0366 -
20663243-20663388,20663467-20663572,20664275-20664367,
20664520-20664657,20664759-20664886,20664996-20665156,
20665277-20665367,20665460-20665516,20666288-20666444
Length = 358
Score = 126 bits (304), Expect = 1e-29
Identities = 54/130 (41%), Positives = 90/130 (69%)
Frame = -1
Query: 566 GNTNITLYLLLCSAIGSLTVVFCKAVALGIKEFVTSGVNNLVNFYFWLLIVSAIICIMLQ 387
G T+I +Y+ +CS +GSL+V+ KA+ + +K SG+N LV W+ ++ + CI+ Q
Sbjct: 180 GQTHIMVYIGVCSLVGSLSVMSVKALGIALK-LTFSGMNQLVYPQMWVFLLFVVACIVTQ 238
Query: 386 MNYLNKSLDIFNTSIVTPVYYVMFTVLVIISSGILFREWEHMTAEDILGCVCGFLIVMTA 207
MNYLNK+LD FNT++V+P+YY MFT L I++S I+F++W+ I+ +CGF+ +++
Sbjct: 239 MNYLNKALDTFNTAVVSPIYYTMFTSLTILASVIMFKDWDRQDPTQIVTEMCGFVTILSG 298
Query: 206 IFMLNAFKDV 177
F+L+ KD+
Sbjct: 299 TFLLHKTKDM 308
>01_06_1567 +
38293612-38293795,38294467-38294523,38294609-38294699,
38294799-38294959,38295045-38295172,38295291-38295428,
38295717-38295809,38298219-38298324,38298393-38298517
Length = 360
Score = 126 bits (303), Expect = 2e-29
Identities = 53/130 (40%), Positives = 89/130 (68%)
Frame = -1
Query: 566 GNTNITLYLLLCSAIGSLTVVFCKAVALGIKEFVTSGVNNLVNFYFWLLIVSAIICIMLQ 387
G T+I +Y+ +CS +GSL+V+ KA+ + +K SG+N L+ W+ + + CI+ Q
Sbjct: 189 GQTHIMVYIGVCSLVGSLSVMSVKALGIALK-LTFSGMNQLIYPQTWMFTIVVVACILTQ 247
Query: 386 MNYLNKSLDIFNTSIVTPVYYVMFTVLVIISSGILFREWEHMTAEDILGCVCGFLIVMTA 207
MNYLNK+LD FNT++V+P+YY MFT L I++S I+F++W+ I+ +CGF+ +++
Sbjct: 248 MNYLNKALDTFNTAVVSPIYYTMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILSG 307
Query: 206 IFMLNAFKDV 177
F+L+ KD+
Sbjct: 308 TFLLHKTKDM 317
>04_03_0632 +
18200844-18200970,18201134-18201190,18201370-18201460,
18201545-18201705,18202176-18202303,18202386-18202523,
18202966-18203058,18203546-18203704
Length = 317
Score = 124 bits (299), Expect = 6e-29
Identities = 54/123 (43%), Positives = 85/123 (69%)
Frame = -1
Query: 545 YLLLCSAIGSLTVVFCKAVALGIKEFVTSGVNNLVNFYFWLLIVSAIICIMLQMNYLNKS 366
Y+ +CS +GSLTV+ KAVA+ +K +GVN + W IV +IC ++Q+NYLNK+
Sbjct: 177 YIAICSLMGSLTVISVKAVAIALK-LSFNGVNQFIYVPTWFFIVVVVICCLVQLNYLNKA 235
Query: 365 LDIFNTSIVTPVYYVMFTVLVIISSGILFREWEHMTAEDILGCVCGFLIVMTAIFMLNAF 186
LD FNT++V+PVYYVMFT+L II++ I++++W A I +CGF+ ++ F+L+
Sbjct: 236 LDSFNTAVVSPVYYVMFTILTIIANMIMYKDWASQNATQIATELCGFVTIVAGTFLLHKT 295
Query: 185 KDV 177
+D+
Sbjct: 296 RDM 298
>01_06_1512 +
37881055-37881229,37881388-37881444,37881537-37881627,
37881759-37881919,37882002-37882129,37882215-37882352,
37882665-37882757,37882858-37882975,37883064-37883194
Length = 363
Score = 124 bits (298), Expect = 8e-29
Identities = 56/131 (42%), Positives = 84/131 (64%)
Frame = -1
Query: 572 KXGNTNITLYLLLCSAIGSLTVVFCKAVALGIKEFVTSGVNNLVNFYFWLLIVSAIICIM 393
+ G NI +Y+ +CS IGSLTV+ KAV + IK G+N F WL V +I CI
Sbjct: 184 RYGQMNIMVYVGICSVIGSLTVMSIKAVGIAIK-LTIEGINQAGYFQTWLFAVISITCIA 242
Query: 392 LQMNYLNKSLDIFNTSIVTPVYYVMFTVLVIISSGILFREWEHMTAEDILGCVCGFLIVM 213
+Q+ YLNK+LD FN ++V+P+YY MFT L I++S I+F++W +A I +CGFL V+
Sbjct: 243 VQLVYLNKALDTFNAAVVSPIYYAMFTTLTILASAIMFKDWSGQSASKIASEICGFLTVL 302
Query: 212 TAIFMLNAFKD 180
+L++ ++
Sbjct: 303 AGTLVLHSTRE 313
>11_01_0607 -
4837257-4837447,4837526-4837631,4837913-4838005,
4838405-4838542,4838651-4838778,4838889-4839049,
4839145-4839235,4841437-4841602
Length = 357
Score = 123 bits (297), Expect = 1e-28
Identities = 55/130 (42%), Positives = 86/130 (66%)
Frame = -1
Query: 566 GNTNITLYLLLCSAIGSLTVVFCKAVALGIKEFVTSGVNNLVNFYFWLLIVSAIICIMLQ 387
G TNI +Y+ +CS +GSLTV+ KA+ + +K SGVN L W + C+ Q
Sbjct: 164 GQTNIMVYIGVCSLLGSLTVMSVKALGIALK-LTFSGVNQLFYPQTWAFALIVATCVSTQ 222
Query: 386 MNYLNKSLDIFNTSIVTPVYYVMFTVLVIISSGILFREWEHMTAEDILGCVCGFLIVMTA 207
+NYLNK+LD FNT++V+P+YYVMFT L I++S I+F++W+ I+ +CGF+ +++
Sbjct: 223 INYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTELCGFVTILSG 282
Query: 206 IFMLNAFKDV 177
F+L+ KD+
Sbjct: 283 TFLLHKTKDM 292
>05_06_0058 +
25258532-25258685,25258767-25258823,25258923-25259013,
25259074-25259282,25259421-25259548,25259651-25259788,
25261017-25261083,25261232-25261353
Length = 321
Score = 56.0 bits (129), Expect = 2e-08
Identities = 25/66 (37%), Positives = 38/66 (57%)
Frame = -1
Query: 566 GNTNITLYLLLCSAIGSLTVVFCKAVALGIKEFVTSGVNNLVNFYFWLLIVSAIICIMLQ 387
G +N+ +Y +CS +GSL+V+ KA+ +K G N LV W ++ C++ Q
Sbjct: 195 GQSNVLIYTAICSLMGSLSVMSVKALGTSLK-LTFEGTNQLVYPETWFFVLIVATCVLTQ 253
Query: 386 MNYLNK 369
MNYLNK
Sbjct: 254 MNYLNK 259
>01_01_1157 -
9203448-9203560,9204725-9204768,9205345-9205433,
9205565-9205609,9205805-9205912,9206003-9206088,
9206492-9206579,9206725-9206910,9207181-9207256,
9207332-9207381,9207715-9207777,9207882-9207962,
9208028-9208130,9208246-9208348,9208489-9208549,
9209059-9209154,9209185-9209225,9209848-9209922,
9210412-9210562
Length = 552
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = -1
Query: 344 IVTPVYYVMFTVLVIISSGILFREWEHMTAEDILGCVCGFLIVMTAIFMLNAFK 183
I+T + ++F L +SS W +T+ +LG +CG L + F+++ F+
Sbjct: 170 IITLISIIIFNTLFGLSSSY----WMALTSRGLLGLMCGILGPIKHYFLISVFQ 219
>06_03_0268 - 18975814-18976065,18978180-18978215
Length = 95
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -1
Query: 431 FWLLIVSAIICIMLQMNY-LNKSLDIFNTSIVT 336
+W +I ++ ++L+ Y N++LD+ NT I+T
Sbjct: 56 YWSIIKPKLMAVLLKFGYGNNQNLDLLNTVIIT 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,678,521
Number of Sequences: 37544
Number of extensions: 213372
Number of successful extensions: 456
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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