Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13e03
         (635 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089521-1|AAL90259.1|  385|Drosophila melanogaster GM13388p pro...   183   2e-46
AE014134-2235|AAF53217.1|  385|Drosophila melanogaster CG12292-P...   183   2e-46
AE014298-559|AAN09107.1|  437|Drosophila melanogaster CG33221-PA...    30   2.3  
X82641-1|CAA57963.1|  643|Drosophila melanogaster alpha 1,2 mann...    29   5.3  
AE014298-1434|AAF46571.3|  643|Drosophila melanogaster CG32684-P...    29   5.3  
BT030440-1|ABO52860.1| 1378|Drosophila melanogaster LD40879p pro...    28   9.2  

>AY089521-1|AAL90259.1|  385|Drosophila melanogaster GM13388p
           protein.
          Length = 385

 Score =  183 bits (446), Expect = 2e-46
 Identities = 86/160 (53%), Positives = 117/160 (73%), Gaps = 1/160 (0%)
 Frame = -1

Query: 581 LCQKXGNTNITLYLLLCSAIGSLTVVFCKAVALGIKEFVTSGVNNLVNFYFWLLIVSAII 402
           +  + G+TN+ +Y+ LCS IGSLTV+ CKA+ L I++ + +G N  + +  W LI+  + 
Sbjct: 204 IAPRHGHTNVVVYIFLCSGIGSLTVMSCKALGLAIRQTLNNGGNVFLTWMPWFLILVTVT 263

Query: 401 CIMLQMNYLNKSLDIFNTSIVTPVYYVMFTVLVIISSGILFREWEHMTAEDILGCVCGFL 222
            I +QMNYLNK+LDIFNTSIVTPVYYVMFT LVI +S ILF+E+ HM  +DILG VCGFL
Sbjct: 264 FIAIQMNYLNKALDIFNTSIVTPVYYVMFTTLVIAASAILFKEFTHMRFDDILGDVCGFL 323

Query: 221 IVMTAIFMLNAFKDVQISFKDLNFNLRQRRSMVSN-DERI 105
           IV+TA+F+LNAF+D+ IS  D+   +R +   VS  DE +
Sbjct: 324 IVITAVFLLNAFRDIDISLNDVRGLMRPKMQRVSQFDEEV 363


>AE014134-2235|AAF53217.1|  385|Drosophila melanogaster CG12292-PA
           protein.
          Length = 385

 Score =  183 bits (446), Expect = 2e-46
 Identities = 86/160 (53%), Positives = 117/160 (73%), Gaps = 1/160 (0%)
 Frame = -1

Query: 581 LCQKXGNTNITLYLLLCSAIGSLTVVFCKAVALGIKEFVTSGVNNLVNFYFWLLIVSAII 402
           +  + G+TN+ +Y+ LCS IGSLTV+ CKA+ L I++ + +G N  + +  W LI+  + 
Sbjct: 204 IAPRHGHTNVVVYIFLCSGIGSLTVMSCKALGLAIRQTLNNGGNVFLTWMPWFLILVTVT 263

Query: 401 CIMLQMNYLNKSLDIFNTSIVTPVYYVMFTVLVIISSGILFREWEHMTAEDILGCVCGFL 222
            I +QMNYLNK+LDIFNTSIVTPVYYVMFT LVI +S ILF+E+ HM  +DILG VCGFL
Sbjct: 264 FIAIQMNYLNKALDIFNTSIVTPVYYVMFTTLVIAASAILFKEFTHMRFDDILGDVCGFL 323

Query: 221 IVMTAIFMLNAFKDVQISFKDLNFNLRQRRSMVSN-DERI 105
           IV+TA+F+LNAF+D+ IS  D+   +R +   VS  DE +
Sbjct: 324 IVITAVFLLNAFRDIDISLNDVRGLMRPKMQRVSQFDEEV 363


>AE014298-559|AAN09107.1|  437|Drosophila melanogaster CG33221-PA
           protein.
          Length = 437

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 18/64 (28%), Positives = 26/64 (40%)
 Frame = -3

Query: 483 RHKRICYFWCQ*SSQFLFLASHCKCNYMHYVTNELLKQIPRHI*Y*YCNTCILCDVHCFS 304
           RH   C       S  LF   H  CN M +   +LLK +  H     C  C+ C  +  S
Sbjct: 304 RHSLSCPALAPRKSSMLFKCPHLLCNAMSHSKMQLLKHLRNHSGR-QCYRCLQCKRYFKS 362

Query: 303 DNFI 292
            +++
Sbjct: 363 TSYL 366


>X82641-1|CAA57963.1|  643|Drosophila melanogaster alpha 1,2
           mannosidase protein.
          Length = 643

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -1

Query: 248 ILGCVCGFLIVMTAIFMLNAFKDVQISFKDLNFNLRQRRSMVSNDE-RIDSNNYILEIPR 72
           ++G +C F+IV+  I  +    ++ +S   +  N +     VSN+E +I   NY+   PR
Sbjct: 13  LIGGIC-FVIVLVGITGITLINNINLS-NIIRLNEKVASDSVSNNENQIKELNYVNNHPR 70

Query: 71  NRHI 60
           N ++
Sbjct: 71  NVYL 74


>AE014298-1434|AAF46571.3|  643|Drosophila melanogaster CG32684-PB,
           isoform B protein.
          Length = 643

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -1

Query: 248 ILGCVCGFLIVMTAIFMLNAFKDVQISFKDLNFNLRQRRSMVSNDE-RIDSNNYILEIPR 72
           ++G +C F+IV+  I  +    ++ +S   +  N +     VSN+E +I   NY+   PR
Sbjct: 13  LIGGIC-FVIVLVGITGITLINNINLS-NIIRLNEKVASDSVSNNENQIKELNYVNNHPR 70

Query: 71  NRHI 60
           N ++
Sbjct: 71  NVYL 74


>BT030440-1|ABO52860.1| 1378|Drosophila melanogaster LD40879p
           protein.
          Length = 1378

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = -1

Query: 200 MLNAFKDVQISFKDLNFNLRQRRSMVSNDERIDSNNYILEIPRNRH 63
           +  +F    +  +     +R+ +       R+  NNY  +IPRN+H
Sbjct: 8   LCGSFALAMLQQQQQQLEIREAQQRQQQKSRLQLNNYYKDIPRNQH 53


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,717,886
Number of Sequences: 53049
Number of extensions: 410221
Number of successful extensions: 875
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2662347150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)