Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13e03
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006804-4|ABO16464.1|  369|Caenorhabditis elegans Hypothetical ...   120   1e-27
AC006804-3|AAF60757.2|  388|Caenorhabditis elegans Hypothetical ...   120   1e-27
Z81041-14|CAN99675.1|  684|Caenorhabditis elegans Hypothetical p...    33   0.23 
Z81041-13|CAN99674.1|  647|Caenorhabditis elegans Hypothetical p...    33   0.23 
Z81041-5|CAB02790.1|  715|Caenorhabditis elegans Hypothetical pr...    33   0.23 
Z81041-3|CAB02791.1|  713|Caenorhabditis elegans Hypothetical pr...    33   0.23 
AF025465-9|AAB71020.2|  136|Caenorhabditis elegans Hypothetical ...    32   0.40 
AC006683-1|AAK71395.4|  954|Caenorhabditis elegans Adenylyl cycl...    31   0.52 
AF016446-4|AAC24164.1|  321|Caenorhabditis elegans Serpentine re...    29   2.1  
AF016446-5|AAC24163.1|  329|Caenorhabditis elegans Serpentine re...    29   2.8  
Z82262-5|CAE17771.1|  679|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z72507-11|CAA96628.2|  123|Caenorhabditis elegans Hypothetical p...    28   4.9  
AF016684-11|AAB66215.1|  555|Caenorhabditis elegans Hypothetical...    28   6.4  

>AC006804-4|ABO16464.1|  369|Caenorhabditis elegans Hypothetical
           protein Y53G8B.4b protein.
          Length = 369

 Score =  120 bits (288), Expect = 1e-27
 Identities = 63/164 (38%), Positives = 101/164 (61%)
 Frame = -1

Query: 572 KXGNTNITLYLLLCSAIGSLTVVFCKAVALGIKEFVTSGVNNLVNFYFWLLIVSAIICIM 393
           + G++NI +Y+ +CS IGSL+V+       G ++F     N L   YFWL   S  +C+ 
Sbjct: 200 RYGHSNILVYISVCSLIGSLSVL--SETLAGNQQFT----NWLT--YFWL--ASVAMCVS 249

Query: 392 LQMNYLNKSLDIFNTSIVTPVYYVMFTVLVIISSGILFREWEHMTAEDILGCVCGFLIVM 213
           +Q+ YLNK+LDIFNTS+VTP+YYV FT  VI++S IL++EW  + A D++G   GFL  +
Sbjct: 250 VQLIYLNKALDIFNTSMVTPIYYVFFTTFVILASSILYKEWSCLGASDVIGNFVGFLTTI 309

Query: 212 TAIFMLNAFKDVQISFKDLNFNLRQRRSMVSNDERIDSNNYILE 81
             IF +  F+DV IS   +   + +  + ++N +   S+  +++
Sbjct: 310 IGIFQMQLFRDVNISLYQVQRLVSRPSATLANADFSSSSTNLVD 353


>AC006804-3|AAF60757.2|  388|Caenorhabditis elegans Hypothetical
           protein Y53G8B.4 protein.
          Length = 388

 Score =  120 bits (288), Expect = 1e-27
 Identities = 63/164 (38%), Positives = 101/164 (61%)
 Frame = -1

Query: 572 KXGNTNITLYLLLCSAIGSLTVVFCKAVALGIKEFVTSGVNNLVNFYFWLLIVSAIICIM 393
           + G++NI +Y+ +CS IGSL+V+       G ++F     N L   YFWL   S  +C+ 
Sbjct: 219 RYGHSNILVYISVCSLIGSLSVL--SETLAGNQQFT----NWLT--YFWL--ASVAMCVS 268

Query: 392 LQMNYLNKSLDIFNTSIVTPVYYVMFTVLVIISSGILFREWEHMTAEDILGCVCGFLIVM 213
           +Q+ YLNK+LDIFNTS+VTP+YYV FT  VI++S IL++EW  + A D++G   GFL  +
Sbjct: 269 VQLIYLNKALDIFNTSMVTPIYYVFFTTFVILASSILYKEWSCLGASDVIGNFVGFLTTI 328

Query: 212 TAIFMLNAFKDVQISFKDLNFNLRQRRSMVSNDERIDSNNYILE 81
             IF +  F+DV IS   +   + +  + ++N +   S+  +++
Sbjct: 329 IGIFQMQLFRDVNISLYQVQRLVSRPSATLANADFSSSSTNLVD 372


>Z81041-14|CAN99675.1|  684|Caenorhabditis elegans Hypothetical
           protein C27A7.5e protein.
          Length = 684

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = -1

Query: 200 MLNAFKDVQISFKDLNFNLRQRRSMVSNDERIDSNNYILEIPRNRHI 60
           +L + K   ++F   ++NLR    + +++  ++S NY+L+I  N HI
Sbjct: 499 ILKSLKAAGVNFSATDYNLRTALHVAASNGHLESVNYLLKIGTNVHI 545


>Z81041-13|CAN99674.1|  647|Caenorhabditis elegans Hypothetical
           protein C27A7.5d protein.
          Length = 647

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = -1

Query: 200 MLNAFKDVQISFKDLNFNLRQRRSMVSNDERIDSNNYILEIPRNRHI 60
           +L + K   ++F   ++NLR    + +++  ++S NY+L+I  N HI
Sbjct: 462 ILKSLKAAGVNFSATDYNLRTALHVAASNGHLESVNYLLKIGTNVHI 508


>Z81041-5|CAB02790.1|  715|Caenorhabditis elegans Hypothetical
           protein C27A7.5c protein.
          Length = 715

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = -1

Query: 200 MLNAFKDVQISFKDLNFNLRQRRSMVSNDERIDSNNYILEIPRNRHI 60
           +L + K   ++F   ++NLR    + +++  ++S NY+L+I  N HI
Sbjct: 530 ILKSLKAAGVNFSATDYNLRTALHVAASNGHLESVNYLLKIGTNVHI 576


>Z81041-3|CAB02791.1|  713|Caenorhabditis elegans Hypothetical
           protein C27A7.5a protein.
          Length = 713

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = -1

Query: 200 MLNAFKDVQISFKDLNFNLRQRRSMVSNDERIDSNNYILEIPRNRHI 60
           +L + K   ++F   ++NLR    + +++  ++S NY+L+I  N HI
Sbjct: 528 ILKSLKAAGVNFSATDYNLRTALHVAASNGHLESVNYLLKIGTNVHI 574


>AF025465-9|AAB71020.2|  136|Caenorhabditis elegans Hypothetical
           protein K02E7.11 protein.
          Length = 136

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -1

Query: 443 VNFYFWLLIVSAIICIML-QMNYLNKSLDIFNTSIVTPVYYVMFTVLVI 300
           +NF +++  +SA+IC++  Q  YL     I+  S++T +Y+    +L++
Sbjct: 59  INFLWFISSISALICVLQDQKRYLR--FHIYFNSVITFIYFCKLIILLV 105


>AC006683-1|AAK71395.4|  954|Caenorhabditis elegans Adenylyl cyclase
           protein 4 protein.
          Length = 954

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 27/124 (21%), Positives = 56/124 (45%)
 Frame = -1

Query: 452 NNLVNFYFWLLIVSAIICIMLQMNYLNKSLDIFNTSIVTPVYYVMFTVLVIISSGILFRE 273
           NN  +F+    I +   C++L ++++ K L       ++ +Y+  FTVL I +  I   +
Sbjct: 614 NNYTDFFEIFEICTLATCVILSVDFMTKLL-------MSMIYFSSFTVL-ITAKLIRINQ 665

Query: 272 WEHMTAEDILGCVCGFLIVMTAIFMLNAFKDVQISFKDLNFNLRQRRSMVSNDERIDSNN 93
           +E + +     CV   L ++  +F  +  +   IS  D  + L+     +    + + N 
Sbjct: 666 YEALLSTYANFCVLSCLTLLLVVF--STRRSELISRYDFIWKLQALDEQLQMKRKHEQNR 723

Query: 92  YILE 81
            +LE
Sbjct: 724 SVLE 727


>AF016446-4|AAC24164.1|  321|Caenorhabditis elegans Serpentine
           receptor, class h protein23 protein.
          Length = 321

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 458 GVNNLVNFYFWLLIVSAIICIMLQMNYLNKSLDIFNTSIVTPVYYVMFTV 309
           G+++LV FY+  L++      + +M Y      I N       Y++ FTV
Sbjct: 87  GMSSLVQFYWIALVMQYTATSVSEMFYFRYKASILNYKTYRFTYFIKFTV 136


>AF016446-5|AAC24163.1|  329|Caenorhabditis elegans Serpentine
           receptor, class h protein22 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/68 (26%), Positives = 29/68 (42%)
 Frame = -1

Query: 503 FCKAVALGIKEFVTSGVNNLVNFYFWLLIVSAIICIMLQMNYLNKSLDIFNTSIVTPVYY 324
           FC   A GI   +  G+++LV FY+  L +      + +M Y      I N       Y+
Sbjct: 74  FCAIRATGILSQI--GMSSLVQFYWLSLAIQYTAASVSEMFYFRYKASILNYKTYRFTYF 131

Query: 323 VMFTVLVI 300
           +  +V  I
Sbjct: 132 IKLSVYFI 139


>Z82262-5|CAE17771.1|  679|Caenorhabditis elegans Hypothetical
           protein C43F9.10 protein.
          Length = 679

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 1/105 (0%)
 Frame = -1

Query: 404 ICIMLQMNYLNKSLDIFNTSIVTPVYYVMF-TVLVIISSGILFREWEHMTAEDILGCVCG 228
           +C+ +Q   L   + IF +   T ++  +F  +L+ IS G      E     ++   V  
Sbjct: 137 LCVEMQFYLLAPIIFIFLSFCSTGMFLAVFHLILISISLGNHLLSTEQAAFNNVFCRVWQ 196

Query: 227 FLIVMTAIFMLNAFKDVQISFKDLNFNLRQRRSMVSNDERIDSNN 93
           FLI     F+     D+          L + +S   +DE  ++N+
Sbjct: 197 FLIGSAVFFLSRELIDLDTKVNKYTELLLEEKSEELSDEENENND 241


>Z72507-11|CAA96628.2|  123|Caenorhabditis elegans Hypothetical
           protein F17C11.6 protein.
          Length = 123

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/81 (23%), Positives = 39/81 (48%)
 Frame = -1

Query: 548 LYLLLCSAIGSLTVVFCKAVALGIKEFVTSGVNNLVNFYFWLLIVSAIICIMLQMNYLNK 369
           ++++L   I ++   F  +V LGI   +   +  L + Y    ++   I ++   + L  
Sbjct: 42  IFVVLLPYISTMACSFGVSVGLGI--LINEAMAKLFSSYESFKVLRRGIVLLSMSSTLAS 99

Query: 368 SLDIFNTSIVTPVYYVMFTVL 306
           SL +    I+TPVY  +F ++
Sbjct: 100 SLIMSLNYIITPVYNFIFFII 120


>AF016684-11|AAB66215.1|  555|Caenorhabditis elegans Hypothetical
           protein F45C12.5 protein.
          Length = 555

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/86 (17%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
 Frame = -1

Query: 461 SGVNNLVNFYFWLLIVSAIICIMLQMNYLNK---SLDIFNTSIVTPVYYVMFTVLVIISS 291
           SGV  ++  Y WL++ + ++ I+L + +  +   S++ F +        ++F  ++   +
Sbjct: 395 SGVTGVLRNYGWLIVFACVLGILLHLRFYKRKQYSIESFCSKRYLMAAGMLFINVLFTGN 454

Query: 290 GI--LFREWEHMTAEDILGCVCGFLI 219
            I  L+  W +   + ++  +  F++
Sbjct: 455 SIFSLYGSWANDIIQPVIISITWFMV 480


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,112,213
Number of Sequences: 27780
Number of extensions: 230278
Number of successful extensions: 631
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)