Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13e02
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...   140   2e-34
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   5.5  
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...    25   7.2  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    25   7.2  
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    25   9.5  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   9.5  

>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1009

 Score =  140 bits (339), Expect = 2e-34
 Identities = 85/234 (36%), Positives = 123/234 (52%), Gaps = 18/234 (7%)
 Frame = -1

Query: 655  YDGAASEHSSCRLERFLQL-TDSPESAPDSEAA------C-LHVANPTTPAQYFHLLRRQ 500
            YDG   EHSS R+ER+LQL  + P   P  E        C +     T P+QYFH LRR 
Sbjct: 775  YDGQGPEHSSARMERYLQLCNEDPREFPSEEKLQRQHQDCNIQAIYVTKPSQYFHALRRN 834

Query: 499  VVRNYRKPLIIVAPKLLLRLADAVSPLSDFAPRTHFQPVI-----GDGLADALKVKRVIF 335
            + R +RKPL+I   K LLR   A S + +F  +  F+ ++     G  +    K++++I 
Sbjct: 835  IHRQFRKPLVIFFSKSLLRHPAARSTIDEFDEKHGFKLILEEEEHGKSILPPEKIEKLII 894

Query: 334  VSGKHYYELHKERVRARLEDVAIVRVEALAPFPLPELQMQLSKYKNATKFIWSQEEHRNM 155
             SG+ +  L K R   +++++AI RVE L PF   ++   +S+Y N  + IW QEE  N 
Sbjct: 895  CSGQVWVALSKAREENKIDNIAITRVEQLHPFGWKQMAANISQYPNLKEIIWCQEEPLNA 954

Query: 154  GAWSFMKPRFENL---CGRKLV--YAGRSEAPTPAVGASSLHRVEVEHVLKEPL 8
            GAW++M+PR   +    GR L   YAGR  + + A G    H  E E  L + L
Sbjct: 955  GAWTYMEPRIYTILKHLGRDLPVRYAGRPPSASVAAGNKQQHLAEQEQFLNDAL 1008


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 399  VRGAKSDRGETASAKRSSNFGATIINGFL 485
            V G +SD  E+A+ K++S F     N FL
Sbjct: 1630 VPGLRSDPAESATNKKASEFVILCFNAFL 1658


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/90 (20%), Positives = 38/90 (42%)
 Frame = -1

Query: 526 QYFHLLRRQVVRNYRKPLIIVAPKLLLRLADAVSPLSDFAPRTHFQPVIGDGLADALKVK 347
           Q F  L  + V     P+  V  K+++     ++P +    +   Q     G  +   ++
Sbjct: 130 QSFEQLTPRAVAVVVDPIQSVKGKVVIDAFRLINPSTLMMGQEPRQTTSNLGHINKPSIQ 189

Query: 346 RVIFVSGKHYYELHKERVRARLEDVAIVRV 257
            +I   G+HYY L     +  LE++ ++ +
Sbjct: 190 ALIHGLGRHYYSLRINYKKTELEEIMLLNL 219


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = +2

Query: 293 HALLMQLVVMLTAYKDHPLHFQ----RISQTVTDY 385
           H LL ++V M+   K HP  F+    R+ Q + DY
Sbjct: 601 HVLLEKVVAMMRDLKVHPQRFEILKNRLEQELKDY 635


>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 19/89 (21%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
 Frame = -1

Query: 391 QPVIGDGLADALKVKRVIFVSGKHYYELHKERVRARLEDVAIVRVEALAPFPLPELQMQL 212
           +P +  G+ +   V+ +++  G  + +++K+R+   L D AI+   AL  + +  ++  +
Sbjct: 139 EPYVTYGIPNLKTVRELLYKRG--FGKVNKQRIA--LSDNAIIEA-ALGKYSILSIEDLI 193

Query: 211 SK-------YKNATKFIWSQEEHRNMGAW 146
            +       +K A  FIW  +    +G W
Sbjct: 194 HEIYTVGPNFKQAANFIWPFQLSSPLGGW 222


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 202 KNATKFIWSQEEHRNMGAWSFMKPRFENL 116
           K A+KF+   +  RN G  SF +  +EN+
Sbjct: 545 KQASKFLNLAQSLRNAGILSFPESEYENI 573


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,237
Number of Sequences: 5004
Number of extensions: 52768
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)