Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13e02
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1795 + 29603694-29605208,29605423-29605649,29605739-296060... 158 4e-39
04_03_0741 + 19187333-19188868,19189264-19189490,19189578-191898... 155 3e-38
03_04_0032 - 16663018-16663026,16663072-16663235,16663384-166635... 35 0.065
07_01_0167 + 1175694-1176015,1176129-1176803,1177064-1177107 32 0.35
09_04_0445 - 17677126-17677512,17677608-17678564 30 1.9
06_03_0906 - 25846424-25846462,25846640-25847014,25847105-258471... 30 1.9
10_07_0091 - 12774590-12774664,12774971-12775134,12775249-127753... 29 2.4
07_03_1738 - 29141829-29141989,29142112-29142343,29142751-291427... 29 3.2
05_02_0049 - 6083364-6084111,6084140-6084246 29 3.2
03_05_0110 + 20910084-20910187,20910255-20910303,20911334-209114... 29 3.2
02_02_0243 - 8226955-8227304,8227355-8228201,8228460-8229467 29 3.2
06_03_0106 + 16702019-16702600 29 4.3
12_01_0780 + 7136996-7137149,7137212-7137279,7137353-7137573,713... 28 5.6
06_01_0097 - 810283-810296,810398-810521,810974-811066,811144-81... 28 7.5
04_03_0795 - 19704354-19704464,19705152-19705214,19705298-197053... 28 7.5
03_02_0784 - 11154395-11154888,11155284-11155360,11155447-111554... 28 7.5
03_02_0309 - 7307241-7307715,7309383-7309591,7309730-7309830,730... 28 7.5
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 27 9.9
06_01_1070 + 8750260-8750335,8750432-8751311,8753719-8754646 27 9.9
01_07_0036 + 40647046-40647100,40647120-40647571,40648135-406482... 27 9.9
>07_03_1795 + 29603694-29605208,29605423-29605649,29605739-29606071,
29606229-29606475,29606948-29607076,29607161-29607376,
29607454-29607577,29608377-29608612
Length = 1008
Score = 158 bits (383), Expect = 4e-39
Identities = 103/245 (42%), Positives = 135/245 (55%), Gaps = 29/245 (11%)
Frame = -1
Query: 655 YDGAASEHSSCRLERFLQLTD-SPESAPDSEAA-------C-LHVANPTTPAQYFHLLRR 503
YDG EHSS RLERFLQ++D +P P+ E C V N TTPA YFH+LRR
Sbjct: 757 YDGQGPEHSSARLERFLQMSDDNPFVIPEMEPTLRKQIQECNWQVVNVTTPANYFHVLRR 816
Query: 502 QVVRNYRKPLIIVAPKLLLRLADAVSPLSDF----------APRTHFQPVI---GDGLAD 362
Q+ R +RKPLI++APK LLR D S LS+F T F+ +I D
Sbjct: 817 QIHREFRKPLIVMAPKNLLRHKDCKSNLSEFDDVEGHPGFDKQGTRFKRLIKDRNDHKQV 876
Query: 361 ALKVKRVIFVSGKHYYELHKERVRARLEDVAIVRVEALAPFPLPELQMQLSKYKNATKFI 182
+KR++ SGK YYEL +ER + DVAI RVE L PFP +Q +L +Y NA + +
Sbjct: 877 EEGIKRLVLCSGKVYYELDEERKKTERSDVAICRVEQLCPFPYDLIQRELKRYPNA-EIV 935
Query: 181 WSQEEHRNMGAWSFMKPRF---ENLCGR----KLVYAGRSEAPTPAVGASSLHRVEVEHV 23
W QEE NMGA+S++ PR GR + Y GR+ + A G S+H E +
Sbjct: 936 WCQEEPMNMGAYSYISPRLYASMKTLGRGSFDDIKYVGRAPSAATATGFLSVHAQEQTEL 995
Query: 22 LKEPL 8
+K+ L
Sbjct: 996 VKKAL 1000
>04_03_0741 + 19187333-19188868,19189264-19189490,19189578-19189899,
19190311-19190399,19190882-19191128,19191756-19191884,
19191967-19192182,19192256-19192379,19192857-19193095
Length = 1042
Score = 155 bits (376), Expect = 3e-38
Identities = 101/245 (41%), Positives = 137/245 (55%), Gaps = 29/245 (11%)
Frame = -1
Query: 655 YDGAASEHSSCRLERFLQLTDS-----PESAP----DSEAACLHVANPTTPAQYFHLLRR 503
YDG EHSS RLERFLQ++D PE P + V N TTPA YFH+LRR
Sbjct: 790 YDGQGPEHSSARLERFLQMSDDNPYVIPEMDPTLRKQIQQCNWQVVNVTTPANYFHVLRR 849
Query: 502 QVVRNYRKPLIIVAPKLLLRLADAVSPLSDF----------APRTHFQPVIGD--GLADA 359
Q+ R++RKPLI+++PK LLR D S LS+F T F+ +I D D
Sbjct: 850 QIHRDFRKPLIVMSPKNLLRHKDCKSNLSEFDDLAGHPGFDKQGTRFKRLIKDQNNHKDL 909
Query: 358 LK-VKRVIFVSGKHYYELHKERVRARLEDVAIVRVEALAPFPLPELQMQLSKYKNATKFI 182
+ +KR++ SGK YYEL +ER + +DVAI RVE L PFP +Q +L +Y NA + +
Sbjct: 910 EEGIKRLVLCSGKVYYELDEERRKKERDDVAICRVEQLCPFPYDLIQRELKRYPNA-EIV 968
Query: 181 WSQEEHRNMGAWSFMKPRF---ENLCGRKLV----YAGRSEAPTPAVGASSLHRVEVEHV 23
W QEE NMGA+S++ PR GR + Y GR+ + A G S+H E +
Sbjct: 969 WCQEEPMNMGAYSYINPRLLTAMRALGRGTIDDIKYVGRAPSAATATGFYSVHVQEQTEL 1028
Query: 22 LKEPL 8
+++ L
Sbjct: 1029 VQKAL 1033
>03_04_0032 -
16663018-16663026,16663072-16663235,16663384-16663517,
16664300-16664393,16667458-16667566,16668441-16668489,
16668622-16668647
Length = 194
Score = 34.7 bits (76), Expect = 0.065
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = -1
Query: 367 ADALKVKRVIFVSGKHYYELHKERVRARLEDVAIVRVEALAPFP 236
AD +KVK+ + VS Y E + V ++L+D AI + APFP
Sbjct: 99 ADGMKVKKPVQVSAPKYVEYLMDWVESQLDDEAIFPQKIGAPFP 142
>07_01_0167 + 1175694-1176015,1176129-1176803,1177064-1177107
Length = 346
Score = 32.3 bits (70), Expect = 0.35
Identities = 25/70 (35%), Positives = 34/70 (48%)
Frame = -1
Query: 595 DSPESAPDSEAACLHVANPTTPAQYFHLLRRQVVRNYRKPLIIVAPKLLLRLADAVSPLS 416
D P A + A C H ++ A + LRR + R+ AP L + DA SPL+
Sbjct: 23 DDPSCAARASAVCKHWSHLLADAGF---LRRYRAFHRRR-----APPRLGFIYDAGSPLA 74
Query: 415 DFAPRTHFQP 386
FAP T F+P
Sbjct: 75 RFAPTTAFRP 84
>09_04_0445 - 17677126-17677512,17677608-17678564
Length = 447
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 105 SWCTREGLRRQPPRWALVH 49
SW R G R +P RWAL H
Sbjct: 168 SWHARSGCRARPARWALFH 186
>06_03_0906 -
25846424-25846462,25846640-25847014,25847105-25847139,
25847283-25847382,25847476-25847553,25847628-25847678,
25847804-25847929,25848021-25848138,25848476-25848483
Length = 309
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 436 DAVSPLSDFAPRTHFQPVIGDGLADALKVKRV 341
+ V P+S+ P F+P+ D AD+L K++
Sbjct: 44 ETVPPISELGPDALFEPMSSDSFADSLSRKKI 75
>10_07_0091 - 12774590-12774664,12774971-12775134,12775249-12775382,
12775463-12775556,12775650-12775758,12776055-12776103,
12778336-12778376,12779539-12779571,12779665-12779754,
12780474-12780507,12781218-12781510,12781859-12782057,
12782129-12782289,12783130-12783282,12783545-12783715,
12783822-12783921,12784023-12784111,12784192-12784290,
12784406-12784676,12784764-12784961,12785041-12785140,
12785799-12785931,12786016-12786277,12787106-12787155
Length = 1033
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 367 ADALKVKRVIFVSGKHYYELHKERVRARLEDVAIVRVEALAPFP 236
AD +++K+ I VS Y E + + +L+D +I + PFP
Sbjct: 916 ADGIQIKKPIEVSAPKYVEYLMDWIEVQLDDESIFPQKLGTPFP 959
>07_03_1738 -
29141829-29141989,29142112-29142343,29142751-29142792,
29143312-29143410,29143575-29143667,29143742-29143876,
29144251-29144290,29144475-29144844,29146575-29146650
Length = 415
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 364 DALKVKRVIFVSGKHYYELHKERVRARLEDVAIVR 260
D +KVK V F+ K + ++ E + A ED I+R
Sbjct: 318 DPIKVKSVHFIGEKDWLKVPSEELAAAFEDPVIIR 352
>05_02_0049 - 6083364-6084111,6084140-6084246
Length = 284
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -2
Query: 300 SACGRGWRTWPL*GWKHSHPSPSRSYRCNSANTKTPRSLSGVKK 169
SA R W W+ S PSP+ C++A T P S S K
Sbjct: 52 SAAASAGRCWSSSSWRSSPPSPAARSTCSTART-APASPSRPSK 94
>03_05_0110 +
20910084-20910187,20910255-20910303,20911334-20911442,
20911597-20911690,20912253-20912386,20912519-20912682,
20912818-20912889
Length = 241
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 367 ADALKVKRVIFVSGKHYYELHKERVRARLEDVAIVRVEALAPFP 236
AD +++K+ I VS Y E + + +L+D +I + PFP
Sbjct: 125 ADGVQIKKPIEVSAPKYVEYLMDWIEGQLDDESIFPQKLGTPFP 168
>02_02_0243 - 8226955-8227304,8227355-8228201,8228460-8229467
Length = 734
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +1
Query: 391 GNECGVRNRTGARRHRLSGAAISELQLSMASCSY 492
G+ G NR+ ARRHR +A SELQL + Y
Sbjct: 210 GDGGGGENRSAARRHR---SATSELQLDLIDLEY 240
>06_03_0106 + 16702019-16702600
Length = 193
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -1
Query: 619 LERFLQLTDSPESAPDSEAACLHVANPTTPAQYFHLLRRQVVRNYRKPLIIVA 461
L R + SP+ P++ LH P P ++ LLR + +R P +A
Sbjct: 94 LRRVISPPSSPDCMPETPETLLHTLTPANPPEF--LLRGTLAACHRAPPFYMA 144
>12_01_0780 +
7136996-7137149,7137212-7137279,7137353-7137573,
7137861-7137948
Length = 176
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 590 SGERARLGGCVSARRQPDDPGPVLPLVEETG-CP*LQEAIDNCS 462
SG +RLG +AR+Q DD V+ + E+ P +E +DN S
Sbjct: 37 SGGSSRLGSGQAARKQVDDAPQVVEVDEDADFAPETKEWLDNLS 80
>06_01_0097 -
810283-810296,810398-810521,810974-811066,811144-811236,
811410-811514,811661-811732,811857-811934,812210-812379,
812507-812741,812832-813074,813243-813338,813445-813582,
814014-814139,814235-814453
Length = 601
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Frame = -1
Query: 385 VIGDGLADALKVKRV-----IFVSGKHYYELHK--ERVRARLEDVAIVRVEALAPFPLPE 227
++GDG KRV + + + YE K ER+ VA+++V A L E
Sbjct: 387 IVGDGSTQEEVTKRVAQIKNLIEAAEQEYEKEKLNERIAKLAGGVAVIQVGAQTETELKE 446
Query: 226 LQMQLSKYKNATK 188
++++ NATK
Sbjct: 447 KKLRVEDALNATK 459
>04_03_0795 -
19704354-19704464,19705152-19705214,19705298-19705378,
19705468-19705623,19705711-19705785,19706477-19706587,
19707206-19707304,19707453-19707546,19707779-19707838,
19709262-19709334,19711448-19711490,19711533-19711606,
19711985-19712075,19712170-19712214,19712533-19712589,
19713440-19713544,19713817-19713932,19714625-19714634,
19714810-19714920,19715502-19715594,19715664-19715690,
19715736-19715798,19716326-19716451,19716812-19716949,
19717164-19717832,19717949-19718123,19718269-19718450
Length = 1015
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -1
Query: 142 FMKPRFENLCGRKLVYAGRSEAPTPAVGASSLHRVEVEHVLK 17
F P E +C KL + P+P SSLH VE+ V K
Sbjct: 178 FSFPNVERIC--KLCRRHVTTPPSPGASGSSLHTVEIISVQK 217
>03_02_0784 -
11154395-11154888,11155284-11155360,11155447-11155497,
11155599-11155672,11156127-11156215,11156533-11156618,
11157570-11157669,11158540-11158622,11158776-11159194
Length = 490
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 569 GGCVSARRQPDDPGPVLPLVEETG 498
GG S+ R P PVLPLV+ TG
Sbjct: 106 GGGSSSARAVRSPSPVLPLVQGTG 129
>03_02_0309 -
7307241-7307715,7309383-7309591,7309730-7309830,
7309918-7310149
Length = 338
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -3
Query: 266 CEGGSTRTLPPPGATDATQQIQKRHEVY 183
CEG + PPG A ++ + RH Y
Sbjct: 255 CEGAAASATMPPGQRSAMERFRARHMTY 282
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = -3
Query: 608 PPVDRQSGERARLGGCVSARRQPDDPGPVLPLVEETGCP 492
PP +S R G S++ P P P LP T P
Sbjct: 668 PPPPPRSSSRTPTGAATSSKGPPPPPPPPLPPANRTNGP 706
>06_01_1070 + 8750260-8750335,8750432-8751311,8753719-8754646
Length = 627
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = -1
Query: 475 LIIVAPKLLLRLADAVSPLSDFAPRTHFQPVIGDGLADALKVKRVIFVSGKHYYELHKER 296
L+ + +L + LA A + L++F + P+IG LAD+L + + Y++ +
Sbjct: 43 LMYLTRQLHMPLAKAATTLTNFGGVSAMTPLIGAFLADSLVGRFWTIAAASLIYQVVRIH 102
Query: 295 VRAR 284
+ AR
Sbjct: 103 IHAR 106
>01_07_0036 +
40647046-40647100,40647120-40647571,40648135-40648257,
40648407-40648461,40648613-40648722,40649352-40649531,
40650003-40650101,40651182-40651280,40652195-40652289,
40652290-40652378,40652739-40652901,40653299-40653404,
40655647-40655829,40656059-40656286,40656373-40656486
Length = 716
Score = 27.5 bits (58), Expect = 9.9
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = -1
Query: 439 ADAVSPLS--DFAPRTHFQPVIGDGLADALKVKRVIFVSGKHYYELHKERVRARLEDVAI 266
A A P+S FA V+G+G + L+VK + HY L +ER+ L D A+
Sbjct: 122 AIAAEPVSCAGFARPAAEDDVLGNGKSAKLRVKETLRAFTSHYLHLVQERM---LSDNAL 178
Query: 265 VRVE 254
V +
Sbjct: 179 VEFQ 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,397,109
Number of Sequences: 37544
Number of extensions: 422630
Number of successful extensions: 1580
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1574
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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