Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13e02
         (655 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    25   1.6  
AY280613-1|AAQ21366.1|  257|Anopheles gambiae carbonic anhydrase...    25   2.1  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    24   3.7  
AF004916-1|AAB94672.1|  686|Anopheles gambiae pro-phenol oxidase...    24   4.8  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    24   4.8  
AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking p...    23   6.4  
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    23   8.4  
CR954256-2|CAJ14143.1|  295|Anopheles gambiae cyclin protein.          23   8.4  

>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 544  NPTTPAQYFHLLRRQVVRNYRKPLIIVAPKLLLRL 440
            +PT   + F++L  +  R  +     V PKLL RL
Sbjct: 973  DPTNERKVFNMLVEETCRTGQSQYFFVTPKLLPRL 1007


>AY280613-1|AAQ21366.1|  257|Anopheles gambiae carbonic anhydrase
           alternate isoform protein.
          Length = 257

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = +2

Query: 170 FLTPDKLRGVFVFAELHL*LREGEGCECFHPHNGHVLQPRPHAL 301
           F+    L   ++F +LH     G+G  C H   G       HA+
Sbjct: 62  FIVGGVLGNKYIFEQLHFHWGIGDGSGCEHTLEGSTYSMEAHAV 105


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 470 YQWLPVVTDNLSPQQVEVLGRGRRVGDVQTRSLRVGRALRTVGQLEESLE 619
           Y W PV+ + L  + +    R R   D+Q RSL          +LE++++
Sbjct: 311 YWWAPVI-EELRNECIAARERMRLTTDLQERSLAAAEHRTAKTRLEKAIK 359


>AF004916-1|AAB94672.1|  686|Anopheles gambiae pro-phenol oxidase
           subunit 2 protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +2

Query: 245 CECFHPHNGHVLQPR--PHALLMQLVVMLTAYKD 340
           C C  PH  H+L P+  P  +   L  M++ Y D
Sbjct: 580 CNCGWPH--HLLIPKGTPEGMQFDLFAMISNYAD 611


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 11/46 (23%), Positives = 19/46 (41%)
 Frame = +2

Query: 347 LHFQRISQTVTDYWLEMSAGCEIGQGRDGIG*AEQQFRSYNYQWLP 484
           +HF  I++T     + +S  C++   R        Q +   Y W P
Sbjct: 268 VHFAEIARTPETLQVALSRACDVAMERVSSSTPYYQTKPQVYWWTP 313


>AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking
           protein.
          Length = 932

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 269 HCEGGSTRTLPPPGATDATQQIQKRHEVYLE 177
           H   GS  + PPP   D + + Q+  EV+ E
Sbjct: 841 HTRQGSEASSPPPFLDDRSLKRQRSLEVFQE 871


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 175 QEEHRNMGAWSFMKPRFENLC 113
           Q+ HRN+  WS +  R  N C
Sbjct: 337 QDPHRNIFWWSPLLARLRNNC 357


>CR954256-2|CAJ14143.1|  295|Anopheles gambiae cyclin protein.
          Length = 295

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 309 CIRSACGRGWRTWPL*GWKHSHPSPSRSYR 220
           C R  CG GW+   +    H+ PS   ++R
Sbjct: 206 CCRKTCGTGWKYRSI-SSLHAPPSHPGAHR 234


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 693,319
Number of Sequences: 2352
Number of extensions: 15241
Number of successful extensions: 40
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64814025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)