Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13e02
(655 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78201-4|CAB01590.2| 911|Caenorhabditis elegans Hypothetical pr... 232 2e-61
Z78019-10|CAE46691.1| 911|Caenorhabditis elegans Hypothetical p... 232 2e-61
AF039040-6|AAB94185.2| 1029|Caenorhabditis elegans Hypothetical ... 166 1e-41
AC024798-1|AAK29914.3| 722|Caenorhabditis elegans Hypothetical ... 36 0.025
U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein. 29 2.9
AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protei... 29 2.9
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p... 28 6.7
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 28 6.7
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 28 6.7
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z35595-8|CAA84640.1| 540|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical pr... 27 8.8
U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone... 27 8.8
EU068466-1|ABU49431.1| 801|Caenorhabditis elegans PRO-3 protein. 27 8.8
AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear recep... 27 8.8
AL132948-40|CAD31812.3| 801|Caenorhabditis elegans Hypothetical... 27 8.8
AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear recep... 27 8.8
AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear recep... 27 8.8
AC024880-9|AAK85515.1| 446|Caenorhabditis elegans Hypothetical ... 27 8.8
>Z78201-4|CAB01590.2| 911|Caenorhabditis elegans Hypothetical protein
ZK836.2 protein.
Length = 911
Score = 232 bits (567), Expect = 2e-61
Identities = 120/218 (55%), Positives = 145/218 (66%), Gaps = 4/218 (1%)
Frame = -1
Query: 655 YDGAASEHSSCRLERFLQLTDSPESAP--DSEAACLHVANPTTPAQYFHLLRRQVVRNYR 482
+DGA EHSSCR+ERFLQL DS E D E + VANPTT AQYFHLLRRQVV NYR
Sbjct: 691 FDGAGPEHSSCRMERFLQLCDSREDQTPVDGENVNMRVANPTTSAQYFHLLRRQVVPNYR 750
Query: 481 KPLIIVAPKLLLRLADAVSPLSDFAPRTHFQPVIGDGLA-DALKVKRVIFVSGKHYYELH 305
KPLI+V PK+LLR A S +++F P T +Q VI + A + K+K+VIFVSGKH+ +
Sbjct: 751 KPLIVVGPKILLRHPKAASTINEFGPGTTYQNVISEEHATSSQKIKKVIFVSGKHWINVE 810
Query: 304 KERVRARLED-VAIVRVEALAPFPLPELQMQLSKYKNATKFIWSQEEHRNMGAWSFMKPR 128
K R L+D VAIVRVE L PFP+ +LQ L KY A F+WSQEE RN GAWSF++PR
Sbjct: 811 KARDERGLKDSVAIVRVEMLCPFPVVDLQAVLKKYPGAQDFVWSQEEPRNAGAWSFVRPR 870
Query: 127 FENLCGRKLVYAGRSEAPTPAVGASSLHRVEVEHVLKE 14
FEN G +L +AGR E A H E E V+ +
Sbjct: 871 FENALGVRLKFAGRPELAWTATAIGEHHTKEAEEVINQ 908
>Z78019-10|CAE46691.1| 911|Caenorhabditis elegans Hypothetical
protein ZK836.2 protein.
Length = 911
Score = 232 bits (567), Expect = 2e-61
Identities = 120/218 (55%), Positives = 145/218 (66%), Gaps = 4/218 (1%)
Frame = -1
Query: 655 YDGAASEHSSCRLERFLQLTDSPESAP--DSEAACLHVANPTTPAQYFHLLRRQVVRNYR 482
+DGA EHSSCR+ERFLQL DS E D E + VANPTT AQYFHLLRRQVV NYR
Sbjct: 691 FDGAGPEHSSCRMERFLQLCDSREDQTPVDGENVNMRVANPTTSAQYFHLLRRQVVPNYR 750
Query: 481 KPLIIVAPKLLLRLADAVSPLSDFAPRTHFQPVIGDGLA-DALKVKRVIFVSGKHYYELH 305
KPLI+V PK+LLR A S +++F P T +Q VI + A + K+K+VIFVSGKH+ +
Sbjct: 751 KPLIVVGPKILLRHPKAASTINEFGPGTTYQNVISEEHATSSQKIKKVIFVSGKHWINVE 810
Query: 304 KERVRARLED-VAIVRVEALAPFPLPELQMQLSKYKNATKFIWSQEEHRNMGAWSFMKPR 128
K R L+D VAIVRVE L PFP+ +LQ L KY A F+WSQEE RN GAWSF++PR
Sbjct: 811 KARDERGLKDSVAIVRVEMLCPFPVVDLQAVLKKYPGAQDFVWSQEEPRNAGAWSFVRPR 870
Query: 127 FENLCGRKLVYAGRSEAPTPAVGASSLHRVEVEHVLKE 14
FEN G +L +AGR E A H E E V+ +
Sbjct: 871 FENALGVRLKFAGRPELAWTATAIGEHHTKEAEEVINQ 908
>AF039040-6|AAB94185.2| 1029|Caenorhabditis elegans Hypothetical
protein T22B11.5 protein.
Length = 1029
Score = 166 bits (403), Expect = 1e-41
Identities = 100/234 (42%), Positives = 136/234 (58%), Gaps = 20/234 (8%)
Frame = -1
Query: 655 YDGAASEHSSCRLERFLQLTDSPESAP--------DSEAACLH-----VANPTTPAQYFH 515
Y+G EHSS R ERFLQ+ + + EA LH VAN TTPA +H
Sbjct: 783 YEGMGPEHSSARPERFLQMCNEDDEIDLEKIAFEGTFEAQQLHDTNWIVANCTTPANIYH 842
Query: 514 LLRRQVVRNYRKPLIIVAPKLLLRLADAVSPLSDFAPRTHFQPVIGDGLADALK---VKR 344
LLRRQV +RKP ++ +PK LLR A SP+ DF ++FQ VI + A + VKR
Sbjct: 843 LLRRQVTMPFRKPAVVFSPKSLLRHPMARSPVEDFQSGSNFQRVIPETGAPSQNPPDVKR 902
Query: 343 VIFVSGKHYYELHKERVRARLE-DVAIVRVEALAPFPLPELQMQLSKYKNATKFIWSQEE 167
V+F +GK YY++ R E DVA+VRVE L+PFP +Q + KY+ A + +W+QEE
Sbjct: 903 VVFCTGKVYYDMVAARKHVGKENDVALVRVEQLSPFPYDLVQQECRKYQGA-EILWAQEE 961
Query: 166 HRNMGAWSFMKPRFENLC---GRKLVYAGRSEAPTPAVGASSLHRVEVEHVLKE 14
H+NMGAWSF++PR +L GR YAGR + +PA G H E + ++ +
Sbjct: 962 HKNMGAWSFVQPRINSLLSIDGRATKYAGRLPSSSPATGNKFTHMQEQKEMMSK 1015
>AC024798-1|AAK29914.3| 722|Caenorhabditis elegans Hypothetical
protein Y48G9A.10 protein.
Length = 722
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = -1
Query: 250 LAPFPLPELQMQLSKYKNATKFIWSQEEHRNMGAWS 143
L+ PLP L+ +++Y ++ KF+ S+EEH N+ A S
Sbjct: 128 LSNLPLPRLEDTVTRYTDSMKFVISEEEHNNLIATS 163
>U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein.
Length = 780
Score = 29.1 bits (62), Expect = 2.9
Identities = 28/101 (27%), Positives = 44/101 (43%)
Frame = -1
Query: 382 IGDGLADALKVKRVIFVSGKHYYELHKERVRARLEDVAIVRVEALAPFPLPELQMQLSKY 203
+ D L +V V+GK E R ++ED + VEA A + + + +L+ +
Sbjct: 674 VNDNFQSKLTRVKVQMVTGKVESEPEIRETRQKVEDDRKLEVEA-AIVRIMKARKKLN-H 731
Query: 202 KNATKFIWSQEEHRNMGAWSFMKPRFENLCGRKLVYAGRSE 80
N + Q HR M + +K R E L R+ Y R E
Sbjct: 732 NNLVAEVTQQLRHRFMPSPIIIKQRIETLIERE--YLARDE 770
>AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protein 3
protein.
Length = 777
Score = 29.1 bits (62), Expect = 2.9
Identities = 28/101 (27%), Positives = 44/101 (43%)
Frame = -1
Query: 382 IGDGLADALKVKRVIFVSGKHYYELHKERVRARLEDVAIVRVEALAPFPLPELQMQLSKY 203
+ D L +V V+GK E R ++ED + VEA A + + + +L+ +
Sbjct: 671 VNDNFQSKLTRVKVQMVTGKVESEPEIRETRQKVEDDRKLEVEA-AIVRIMKARKKLN-H 728
Query: 202 KNATKFIWSQEEHRNMGAWSFMKPRFENLCGRKLVYAGRSE 80
N + Q HR M + +K R E L R+ Y R E
Sbjct: 729 NNLVAEVTQQLRHRFMPSPIIIKQRIETLIERE--YLARDE 767
>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 269 HCEGGSTRTLPPPGATDATQQIQKRHEVYLES 174
HCE +++T PP +++Q RH+ +S
Sbjct: 644 HCEPSNSKTSQPPTPKSRPEKVQIRHDTISKS 675
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical protein
F07A11.6c protein.
Length = 2392
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 269 HCEGGSTRTLPPPGATDATQQIQKRHEVYLES 174
HCE +++T PP +++Q RH+ +S
Sbjct: 935 HCEPSNSKTSQPPTPKSRPEKVQIRHDTISKS 966
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical protein
F07A11.6b protein.
Length = 2407
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 269 HCEGGSTRTLPPPGATDATQQIQKRHEVYLES 174
HCE +++T PP +++Q RH+ +S
Sbjct: 950 HCEPSNSKTSQPPTPKSRPEKVQIRHDTISKS 981
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 269 HCEGGSTRTLPPPGATDATQQIQKRHEVYLES 174
HCE +++T PP +++Q RH+ +S
Sbjct: 950 HCEPSNSKTSQPPTPKSRPEKVQIRHDTISKS 981
>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 269 HCEGGSTRTLPPPGATDATQQIQKRHEVYLES 174
HCE +++T PP +++Q RH+ +S
Sbjct: 644 HCEPSNSKTSQPPTPKSRPEKVQIRHDTISKS 675
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 269 HCEGGSTRTLPPPGATDATQQIQKRHEVYLES 174
HCE +++T PP +++Q RH+ +S
Sbjct: 935 HCEPSNSKTSQPPTPKSRPEKVQIRHDTISKS 966
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 269 HCEGGSTRTLPPPGATDATQQIQKRHEVYLES 174
HCE +++T PP +++Q RH+ +S
Sbjct: 950 HCEPSNSKTSQPPTPKSRPEKVQIRHDTISKS 981
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 269 HCEGGSTRTLPPPGATDATQQIQKRHEVYLES 174
HCE +++T PP +++Q RH+ +S
Sbjct: 950 HCEPSNSKTSQPPTPKSRPEKVQIRHDTISKS 981
>Z35595-8|CAA84640.1| 540|Caenorhabditis elegans Hypothetical
protein C01G6.7 protein.
Length = 540
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 547 ANPTTPAQYFHLLRRQVVRNYRKPLI 470
ANP +P F +L ++VRN + PLI
Sbjct: 149 ANPPSPVIKFDVLTSRLVRNLKMPLI 174
>Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical
protein C48D5.1 protein.
Length = 619
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -3
Query: 590 SGERARLGGCVSARRQPDDPGPVLPLVEETG 498
SG R RL R D P P LPL+ G
Sbjct: 344 SGRRGRLSSKTKLARSEDQPSPPLPLLALMG 374
>U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone
receptor familymember CNR8 protein.
Length = 463
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -3
Query: 590 SGERARLGGCVSARRQPDDPGPVLPLVEETG 498
SG R RL R D P P LPL+ G
Sbjct: 188 SGRRGRLSSKTKLARSEDQPSPPLPLLALMG 218
>EU068466-1|ABU49431.1| 801|Caenorhabditis elegans PRO-3 protein.
Length = 801
Score = 27.5 bits (58), Expect = 8.8
Identities = 21/76 (27%), Positives = 35/76 (46%)
Frame = -1
Query: 304 KERVRARLEDVAIVRVEALAPFPLPELQMQLSKYKNATKFIWSQEEHRNMGAWSFMKPRF 125
+E + E+ A+V EA E +L KN+ I +QE+ +N+ A+ K
Sbjct: 614 EEEIDDEAEEEAVVEEEASEAV---EKDPKLKASKNSMDRIMTQEDFKNIKAYQLKKQLI 670
Query: 124 ENLCGRKLVYAGRSEA 77
+K + GRS+A
Sbjct: 671 GEKRLKKQMGKGRSQA 686
>AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -3
Query: 590 SGERARLGGCVSARRQPDDPGPVLPLVEETG 498
SG R RL R D P P LPL+ G
Sbjct: 344 SGRRGRLSSKTKLARSEDQPSPPLPLLALMG 374
>AL132948-40|CAD31812.3| 801|Caenorhabditis elegans Hypothetical
protein Y39B6A.14 protein.
Length = 801
Score = 27.5 bits (58), Expect = 8.8
Identities = 21/76 (27%), Positives = 35/76 (46%)
Frame = -1
Query: 304 KERVRARLEDVAIVRVEALAPFPLPELQMQLSKYKNATKFIWSQEEHRNMGAWSFMKPRF 125
+E + E+ A+V EA E +L KN+ I +QE+ +N+ A+ K
Sbjct: 614 EEEIDDEAEEEAVVEEEASEAV---EKDPKLKASKNSMDRIMTQEDFKNIKAYQLKKQLI 670
Query: 124 ENLCGRKLVYAGRSEA 77
+K + GRS+A
Sbjct: 671 GEKRLKKQMGKGRSQA 686
>AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 469
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -3
Query: 590 SGERARLGGCVSARRQPDDPGPVLPLVEETG 498
SG R RL R D P P LPL+ G
Sbjct: 194 SGRRGRLSSKTKLARSEDQPSPPLPLLALMG 224
>AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -3
Query: 590 SGERARLGGCVSARRQPDDPGPVLPLVEETG 498
SG R RL R D P P LPL+ G
Sbjct: 344 SGRRGRLSSKTKLARSEDQPSPPLPLLALMG 374
>AC024880-9|AAK85515.1| 446|Caenorhabditis elegans Hypothetical
protein Y97E10AR.6 protein.
Length = 446
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 598 TDSPESAPDSEAACLHVANPTTPAQ 524
T S +S+P SE++ + V PT+P+Q
Sbjct: 378 TSSKKSSPSSESSVVVVEEPTSPSQ 402
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,199,168
Number of Sequences: 27780
Number of extensions: 316385
Number of successful extensions: 1075
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -