Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13d23
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    26   2.9  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    25   6.7  
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar...    25   6.7  
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    24   8.8  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    24   8.8  

>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 202 NPRIVECKNCPTNCCV*YESFLMYRRNE 285
           +P  +  K CP      YES L +R NE
Sbjct: 301 HPSTITNKKCPQKMLQFYESHLTFRENE 328


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -3

Query: 424 FT*FECYGCIKEQLKNIHQY*R 359
           FT F CY CI    K   QY R
Sbjct: 539 FTSFSCYNCISGTRKYSRQYSR 560


>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 179 SFKYQNLSIHVLLSAKTVQLTAVCSMKVF*CIVGTKVSQL 298
           SFK  N    ++L +KT  L     +K F CI  +K+  L
Sbjct: 77  SFKSFNSLRFIVLKSKTCLLRYKLLIKTFCCITYSKIENL 116


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 199 INPRIVECKNCPTNC 243
           +NP I++C NC   C
Sbjct: 44  LNPNIIKCGNCKNLC 58


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +1

Query: 148 VQQQHILTIIKFQVSKLINPRIVECKNCPTNCC 246
           V+    L + K  + KL +P  +EC     N C
Sbjct: 425 VETPECLDLFKIFIQKLASPTFLECLGFADNFC 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,644,227
Number of Sequences: 5004
Number of extensions: 30585
Number of successful extensions: 71
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)