Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13d23
         (435 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0859 + 28805836-28805842,28806405-28806492,28807474-288075...    29   1.6  
05_04_0355 - 20577189-20577275,20578001-20578129,20578252-205783...    27   6.6  
01_01_0456 - 3385907-3386174,3386283-3386470,3386542-3387027,338...    27   8.7  

>04_04_0859 + 28805836-28805842,28806405-28806492,28807474-28807558,
            28807638-28807763,28807819-28807968,28808497-28808541,
            28808612-28808875,28809843-28809887,28810395-28810430,
            28812048-28812816,28813063-28813925,28814024-28814182,
            28814440-28814558,28815356-28815417,28816677-28816805,
            28817395-28817460,28817757-28817890,28818025-28818162,
            28818630-28818889,28818996-28819107,28819590-28819675,
            28820655-28820735,28822841-28822928,28823222-28823260,
            28823847-28823964,28824063-28824130,28824884-28824981,
            28825238-28825397,28825691-28825816,28825876-28825945,
            28826046-28826449
          Length = 1664

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 9/41 (21%), Positives = 24/41 (58%)
 Frame = +1

Query: 73   IFNKNTHRVTQNKHLRIFPHDPQSQVQQQHILTIIKFQVSK 195
            +++  +H   QN+H+  F H+P+ Q  +++++   + +  K
Sbjct: 1091 LYSGKSHETKQNEHIYDFLHNPEVQALEKNVMDTYRKRTEK 1131


>05_04_0355 -
           20577189-20577275,20578001-20578129,20578252-20578371,
           20578505-20578741,20578983-20579258,20579375-20579508,
           20580006-20581632
          Length = 869

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 392 GTVKKYTPILKIVLAKINFIV*SYQNNC 309
           GT    TP+L I   +++F+V SY+N C
Sbjct: 730 GTPGSITPVLSIS-TELDFVVASYENGC 756


>01_01_0456 -
           3385907-3386174,3386283-3386470,3386542-3387027,
           3387123-3387184,3387269-3387429,3388215-3388290,
           3388382-3388471,3388591-3388659,3389498-3389756
          Length = 552

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 118 RIFPHDPQSQVQQQHILTIIKFQV 189
           ++F  DP+S++QQ H+  I K  V
Sbjct: 239 KVFAMDPKSKIQQGHLFCITKKDV 262


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,593,934
Number of Sequences: 37544
Number of extensions: 162371
Number of successful extensions: 270
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)