Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13d23
         (435 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2525|ABC66137.1|  279|Drosophila melanogaster CG33986-P...    28   6.3  
AY119468-1|AAM50122.1|  667|Drosophila melanogaster GH04243p pro...    27   8.3  
AE014134-709|AAN11172.1|  667|Drosophila melanogaster CG3714-PE,...    27   8.3  
AE014134-708|AAN11171.1|  667|Drosophila melanogaster CG3714-PD,...    27   8.3  
AE014134-707|AAN11170.1|  667|Drosophila melanogaster CG3714-PC,...    27   8.3  
AE014134-706|AAN11169.1|  667|Drosophila melanogaster CG3714-PB,...    27   8.3  

>AE014296-2525|ABC66137.1|  279|Drosophila melanogaster CG33986-PA
           protein.
          Length = 279

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = +3

Query: 171 NNKVSSIKTYQSTYC*VQKLSN*LLCVV*KFFNVSSERKYHNCFHGTIIL 320
           NN V+   TY ST    Q+ S+ ++ V     + SS RKY+ C++G  IL
Sbjct: 118 NNMVTDAATYCSTLVEQQQSSDRIVYVG----SSSSCRKYYICYYGQAIL 163


>AY119468-1|AAM50122.1|  667|Drosophila melanogaster GH04243p
           protein.
          Length = 667

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 90  AQGNAEQTPKDLSTRSTIAGATATHIDNNKVSSIKT 197
           AQ N  +TPKD   + T    T T        ++KT
Sbjct: 362 AQNNGSRTPKDTDIQDTSTSTTTTKTTATATGTLKT 397


>AE014134-709|AAN11172.1|  667|Drosophila melanogaster CG3714-PE,
           isoform E protein.
          Length = 667

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 90  AQGNAEQTPKDLSTRSTIAGATATHIDNNKVSSIKT 197
           AQ N  +TPKD   + T    T T        ++KT
Sbjct: 362 AQNNGSRTPKDTDIQDTSTSTTTTKTTATATGTLKT 397


>AE014134-708|AAN11171.1|  667|Drosophila melanogaster CG3714-PD,
           isoform D protein.
          Length = 667

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 90  AQGNAEQTPKDLSTRSTIAGATATHIDNNKVSSIKT 197
           AQ N  +TPKD   + T    T T        ++KT
Sbjct: 362 AQNNGSRTPKDTDIQDTSTSTTTTKTTATATGTLKT 397


>AE014134-707|AAN11170.1|  667|Drosophila melanogaster CG3714-PC,
           isoform C protein.
          Length = 667

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 90  AQGNAEQTPKDLSTRSTIAGATATHIDNNKVSSIKT 197
           AQ N  +TPKD   + T    T T        ++KT
Sbjct: 362 AQNNGSRTPKDTDIQDTSTSTTTTKTTATATGTLKT 397


>AE014134-706|AAN11169.1|  667|Drosophila melanogaster CG3714-PB,
           isoform B protein.
          Length = 667

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 90  AQGNAEQTPKDLSTRSTIAGATATHIDNNKVSSIKT 197
           AQ N  +TPKD   + T    T T        ++KT
Sbjct: 362 AQNNGSRTPKDTDIQDTSTSTTTTKTTATATGTLKT 397


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,094,288
Number of Sequences: 53049
Number of extensions: 312729
Number of successful extensions: 912
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1376136036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)