Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13d22
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...   109   2e-25

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score =  109 bits (263), Expect = 2e-25
 Identities = 69/200 (34%), Positives = 87/200 (43%)
 Frame = -1

Query: 618 LGGGFAVDNATLTRFYTXXXXXXXXXXXXXXXXXXXXHQTGSNNPLGLNRNLDKIPFHPF 439
           L GGF+V N TL RF++                    H  GS+NPLG+  N+D+IP +P+
Sbjct: 165 LWGGFSVSNPTLNRFFSLHYLMPFVIAALSVMHLIALHTNGSSNPLGVTANMDRIPMNPY 224

Query: 438 FTFKDXXXXXXXXXXXXXXXXINPYLLGDPDNFTPANPLVTPVHIQPE*YFLFAYAILRS 259
           +  KD                 NPY   +PD   PA+PL TP+ I PE Y L  YAILR+
Sbjct: 225 YLIKDLITIFIFLIGINYMAFYNPYGFMEPDCALPADPLKTPMSIVPEWYLLPFYAILRA 284

Query: 258 IPNKLGGVXXXXXXXXXXXXLPFTFKKKIQGIQFYPINQXXXXXXXXXXXXXXXIGARPV 79
           IPN   GV            LP      I+G  F P  +               IG    
Sbjct: 285 IPNFQLGVIAMLLSILVLLLLPLLDFSAIRGNSFNPFGKFFFWTFVADFVILAWIGGSHP 344

Query: 78  ENPYIITGQLLTIIYFLYFF 19
           EN +I  G + TI YF YFF
Sbjct: 345 ENVFITIGAIATIFYFSYFF 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,789,935
Number of Sequences: 5004
Number of extensions: 25843
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)