Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13d21
(789 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 372 e-104
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 153 3e-38
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 153 3e-38
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 152 5e-38
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 152 5e-38
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 92 1e-19
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 44 3e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 42 8e-05
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 41 2e-04
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 33 0.035
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe... 30 0.43
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 1.0
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 27 2.3
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 3.1
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 27 4.0
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 25 9.4
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 372 bits (914), Expect = e-104
Identities = 182/197 (92%), Positives = 189/197 (95%)
Frame = -1
Query: 672 KEGIPPDQPRLXFAGNQLEDGRTLSXLQHPEESTLHLVLRLRGGMQIFVKTLTGKTITLE 493
KEGIPPDQ RL FAG QLEDGRTLS +ESTLHLVLRLRGGMQIFVKTLTGKTITLE
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE 92
Query: 492 VEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 313
VE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 93 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Query: 312 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 133
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 132 IQKESTLHLVLRLRGGM 82
IQKESTLHLVLRLRGGM
Sbjct: 213 IQKESTLHLVLRLRGGM 229
Score = 372 bits (914), Expect = e-104
Identities = 182/197 (92%), Positives = 189/197 (95%)
Frame = -1
Query: 672 KEGIPPDQPRLXFAGNQLEDGRTLSXLQHPEESTLHLVLRLRGGMQIFVKTLTGKTITLE 493
KEGIPPDQ RL FAG QLEDGRTLS +ESTLHLVLRLRGGMQIFVKTLTGKTITLE
Sbjct: 109 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE 168
Query: 492 VEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 313
VE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 169 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
Query: 312 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 133
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 132 IQKESTLHLVLRLRGGM 82
IQKESTLHLVLRLRGGM
Sbjct: 289 IQKESTLHLVLRLRGGM 305
Score = 370 bits (911), Expect = e-103
Identities = 181/197 (91%), Positives = 189/197 (95%)
Frame = -1
Query: 672 KEGIPPDQPRLXFAGNQLEDGRTLSXLQHPEESTLHLVLRLRGGMQIFVKTLTGKTITLE 493
KEGIPPDQ RL FAG QLEDGRTLS +ESTLHLVLRLRGGMQIFVKTLTGKTITLE
Sbjct: 185 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE 244
Query: 492 VEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 313
VE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 245 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304
Query: 312 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 133
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 132 IQKESTLHLVLRLRGGM 82
IQKESTLHLVLRLRGG+
Sbjct: 365 IQKESTLHLVLRLRGGL 381
Score = 303 bits (743), Expect = 2e-83
Identities = 147/153 (96%), Positives = 153/153 (100%)
Frame = -1
Query: 540 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 361
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 360 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLI 181
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLI
Sbjct: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 120
Query: 180 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 82
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 153
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 153 bits (371), Expect = 3e-38
Identities = 76/88 (86%), Positives = 82/88 (93%), Gaps = 1/88 (1%)
Frame = -1
Query: 540 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 361
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 360 IQKESTLHLVLRLRGG-MQIFVKTLTGK 280
IQKESTLHLVLRLRGG ++ +K L K
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASK 88
Score = 153 bits (370), Expect = 4e-38
Identities = 73/77 (94%), Positives = 77/77 (100%)
Frame = -1
Query: 312 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 133
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 132 IQKESTLHLVLRLRGGM 82
IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGI 77
Score = 73.7 bits (173), Expect = 3e-14
Identities = 38/56 (67%), Positives = 42/56 (75%), Gaps = 1/56 (1%)
Frame = -1
Query: 672 KEGIPPDQPRLXFAGNQLEDGRTLSXLQHPEESTLHLVLRLRGG-MQIFVKTLTGK 508
KEGIPPDQ RL FAG QLEDGRTLS +ESTLHLVLRLRGG ++ +K L K
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASK 88
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 153 bits (371), Expect = 3e-38
Identities = 76/88 (86%), Positives = 82/88 (93%), Gaps = 1/88 (1%)
Frame = -1
Query: 540 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 361
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 360 IQKESTLHLVLRLRGG-MQIFVKTLTGK 280
IQKESTLHLVLRLRGG ++ +K L K
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASK 88
Score = 153 bits (370), Expect = 4e-38
Identities = 73/77 (94%), Positives = 77/77 (100%)
Frame = -1
Query: 312 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 133
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 132 IQKESTLHLVLRLRGGM 82
IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGI 77
Score = 73.7 bits (173), Expect = 3e-14
Identities = 38/56 (67%), Positives = 42/56 (75%), Gaps = 1/56 (1%)
Frame = -1
Query: 672 KEGIPPDQPRLXFAGNQLEDGRTLSXLQHPEESTLHLVLRLRGG-MQIFVKTLTGK 508
KEGIPPDQ RL FAG QLEDGRTLS +ESTLHLVLRLRGG ++ +K L K
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASK 88
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 152 bits (369), Expect = 5e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = -1
Query: 540 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 361
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 360 IQKESTLHLVLRLRGG 313
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 152 bits (369), Expect = 5e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = -1
Query: 312 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 133
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 132 IQKESTLHLVLRLRGG 85
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 72.9 bits (171), Expect = 5e-14
Identities = 35/44 (79%), Positives = 36/44 (81%)
Frame = -1
Query: 672 KEGIPPDQPRLXFAGNQLEDGRTLSXLQHPEESTLHLVLRLRGG 541
KEGIPPDQ RL FAG QLEDGRTLS +ESTLHLVLRLRGG
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 152 bits (369), Expect = 5e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = -1
Query: 540 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 361
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 360 IQKESTLHLVLRLRGG 313
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 152 bits (369), Expect = 5e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = -1
Query: 312 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 133
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 132 IQKESTLHLVLRLRGG 85
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 72.9 bits (171), Expect = 5e-14
Identities = 35/44 (79%), Positives = 36/44 (81%)
Frame = -1
Query: 672 KEGIPPDQPRLXFAGNQLEDGRTLSXLQHPEESTLHLVLRLRGG 541
KEGIPPDQ RL FAG QLEDGRTLS +ESTLHLVLRLRGG
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 91.9 bits (218), Expect = 1e-19
Identities = 40/76 (52%), Positives = 56/76 (73%)
Frame = -1
Query: 540 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 361
M I VKTLTGK I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 360 IQKESTLHLVLRLRGG 313
++ S LHLVL LRGG
Sbjct: 61 LEGGSVLHLVLALRGG 76
Score = 91.9 bits (218), Expect = 1e-19
Identities = 40/76 (52%), Positives = 56/76 (73%)
Frame = -1
Query: 312 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 133
M I VKTLTGK I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 132 IQKESTLHLVLRLRGG 85
++ S LHLVL LRGG
Sbjct: 61 LEGGSVLHLVLALRGG 76
Score = 48.0 bits (109), Expect = 2e-06
Identities = 23/44 (52%), Positives = 26/44 (59%)
Frame = -1
Query: 672 KEGIPPDQPRLXFAGNQLEDGRTLSXLQHPEESTLHLVLRLRGG 541
KEGIPP Q RL +AG Q+ D + S LHLVL LRGG
Sbjct: 33 KEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 43.6 bits (98), Expect = 3e-05
Identities = 18/54 (33%), Positives = 35/54 (64%)
Frame = -1
Query: 510 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 349
K + +V A I +K KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
Score = 43.6 bits (98), Expect = 3e-05
Identities = 18/54 (33%), Positives = 35/54 (64%)
Frame = -1
Query: 282 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 121
K + +V A I +K KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 42.3 bits (95), Expect = 8e-05
Identities = 21/73 (28%), Positives = 39/73 (53%)
Frame = -1
Query: 540 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 361
+ + +K + + V++ ++ +K I I ++QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 360 IQKESTLHLVLRL 322
IQ ++HLV L
Sbjct: 64 IQDGHSIHLVKTL 76
Score = 42.3 bits (95), Expect = 8e-05
Identities = 21/73 (28%), Positives = 39/73 (53%)
Frame = -1
Query: 312 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 133
+ + +K + + V++ ++ +K I I ++QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 132 IQKESTLHLVLRL 94
IQ ++HLV L
Sbjct: 64 IQDGHSIHLVKTL 76
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = -1
Query: 513 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 340
GK LE+E ++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = -1
Query: 285 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 112
GK LE+E ++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 33.5 bits (73), Expect = 0.035
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -1
Query: 621 LEDGRTLSXLQHP-EESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQD 445
+++ R+L LQH EES L+ +R + VKT T ++ SD I + K+K +
Sbjct: 734 VQELRSLYNLQHTHEESQKELMYGVRNDIDALVKTCTTSLNDADIILSDYISDQKSKFES 793
Query: 444 KE 439
K+
Sbjct: 794 KQ 795
>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 29.9 bits (64), Expect = 0.43
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +1
Query: 469 FDGVRCFNFQCDGFTGKCFHKNLHSTS 549
FDG + +N CD F GKCFHK +TS
Sbjct: 20 FDGYKIYN--CDPF-GKCFHKIQGATS 43
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 1.0
Identities = 34/139 (24%), Positives = 61/139 (43%)
Frame = +2
Query: 206 IPSLS*ILAFTFSMVSDASTSNVMVLPVSVLTKICMPPRSLKTKCRVDSFWML*SDSVRP 385
+PS + + T S + +ST + +L S ++ +P S + + S + SD +
Sbjct: 114 LPSSTSFFSPTSSEYTPSSTESSSLLDPSSVSSAILPS-STSVEVSISSSSLSSSDPL-- 170
Query: 386 SSSCFPAKINRC*SGGIPSLS*ILAFTFSMVSDASTSNVMVLPVSVFTKICIPPLRRNTK 565
+SS F + ++ S PS+S + TFS + STS+ + SV + P ++
Sbjct: 171 TSSTF-SSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSST 229
Query: 566 CRVDSSGCCSXDNVRPSSS 622
S S + SSS
Sbjct: 230 LTSSSLSTSSIPSTSSSSS 248
Score = 26.6 bits (56), Expect = 4.0
Identities = 33/137 (24%), Positives = 58/137 (42%)
Frame = +2
Query: 89 PRSLKTKCKVDSFWML*SDSVRPSSSCLPAKINRC*SGGIPSLS*ILAFTFSMVSDASTS 268
P S + + S + SD P +S + ++ S PS+S + TFS + STS
Sbjct: 150 PSSTSVEVSISSSSLSSSD---PLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTS 206
Query: 269 NVMVLPVSVLTKICMPPRSLKTKCRVDSFWML*SDSVRPSSSCFPAKINRC*SGGIPSLS 448
+ + SV++ P S + S S SSS + ++ S S S
Sbjct: 207 SSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSS 266
Query: 449 *ILAFTFSMVSDASTSN 499
+ + S++S +S+S+
Sbjct: 267 ---SSSSSIISSSSSSS 280
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +3
Query: 120 ILSGCCSQIVYGHLQAVCPQRSIAADPEE--FPL 215
+L+G C+ I+Y H V +R+ PE+ +PL
Sbjct: 379 VLAGACTPIIYVHYNRVYTRRNGVMSPEDRLYPL 412
Score = 25.8 bits (54), Expect = 7.1
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +3
Query: 348 ILSGCCSQIVYGRLQAVSPQRSIAADPEEFPLCPEFWLSHFRWCQMLQLPM*WF 509
+L+G C+ I+Y V +R+ PE+ L P F+ S ML + M WF
Sbjct: 379 VLAGACTPIIYVHYNRVYTRRNGVMSPED-RLYPLFFGS-----IMLPISMFWF 426
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 27.1 bits (57), Expect = 3.1
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = -1
Query: 537 QIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD--Y 364
+I V T+ K +V + T+ +K I P D+ +LI AG+ L + L + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 363 NIQKESTLHLVLRLRGGMQIFVKTLTGKTI 274
+ T HLV+ + + + T ++
Sbjct: 65 DATDLVTFHLVIAVFNSTSTTLPSATSSSV 94
Score = 26.2 bits (55), Expect = 5.4
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -1
Query: 309 QIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD--Y 136
+I V T+ K +V + T+ +K I P D+ +LI AG+ L + L + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 135 NIQKESTLHLVL 100
+ T HLV+
Sbjct: 65 DATDLVTFHLVI 76
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -1
Query: 600 SXLQHPEESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQD 445
S L H S + +L + + +VK + GKT L VE + +E KA + +
Sbjct: 210 SLLDHLYNSYFYQLLMTKTPVVFYVKQMVGKTRQLAVEVHNHVEE-KALVDE 260
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +3
Query: 150 YGHLQAVCPQRSIAADPEEFPLCPESWLSHFRWCQMLQLP 269
Y L +C + + P E+W + + W +MLQ P
Sbjct: 380 YWSLGCICYECLVGYPPFSGSTLQETWTNLYYWREMLQRP 419
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,105,381
Number of Sequences: 5004
Number of extensions: 62911
Number of successful extensions: 202
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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