Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13d19
(626 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0306 + 2499350-2499678,2500041-2500137 31 0.75
01_02_0007 + 10132380-10133201 29 2.3
12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916 29 3.0
04_04_1413 - 33386049-33386339 29 3.0
11_06_0156 + 20748472-20748951 29 4.0
05_04_0183 - 18849749-18850225,18850305-18850431,18851762-18853515 29 4.0
04_04_1156 - 31319747-31320085,31320556-31320706,31320795-313210... 29 4.0
02_04_0166 - 20508656-20509092,20509282-20509372 29 4.0
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 29 4.0
01_01_0082 + 625198-625719 29 4.0
09_04_0130 - 14905044-14905505,14905865-14905933,14906000-149061... 28 5.3
05_02_0164 - 7240739-7243051,7243902-7244036,7244322-7245371 28 5.3
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 28 7.0
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 28 7.0
06_03_1249 - 28688997-28689248,28689469-28689533,28690016-286900... 28 7.0
02_01_0377 + 2728892-2729187,2729483-2729544,2730516-2730570,273... 28 7.0
01_06_1531 + 38024757-38024790,38025592-38025803,38026111-380262... 28 7.0
08_02_1243 - 25527523-25527960,25527993-25528604 27 9.2
06_03_0543 + 21967787-21970261 27 9.2
03_05_0543 - 25404630-25405408,25405461-25405605 27 9.2
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 27 9.2
>01_01_0306 + 2499350-2499678,2500041-2500137
Length = 141
Score = 31.1 bits (67), Expect = 0.75
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 46 TLAKPAGWPLWQP*ADPNDVIPI 114
TL + WP+WQP D N ++P+
Sbjct: 119 TLGELMDWPIWQPSQDLNSILPV 141
>01_02_0007 + 10132380-10133201
Length = 273
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = +1
Query: 70 PLWQP*ADPNDVIPI---S*RLPPLPMVRGPPESPLQVLRPLEPST---QRVEAMITLFP 231
PL QP DPN+ P+ PP P+ + P SP Q L +P+T Q++ A I+ P
Sbjct: 187 PLPQP--DPNNPQPLPQPDPNAPPQPLPQPDPNSPPQPLPQPDPNTPPGQQINAKISSQP 244
Query: 232 N 234
+
Sbjct: 245 D 245
>12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916
Length = 259
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 477 LDIGGGDPGASGEDVSCAKSEGELTSLGSPG 569
+++ G D S SC S+G ++ GSPG
Sbjct: 169 MEVDGNDDSDSSSPTSCVSSDGRSSAGGSPG 199
>04_04_1413 - 33386049-33386339
Length = 96
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = -1
Query: 200 CVDGSNGRSTCSGDSGGPLTIGSGGSRQLIGITSFGSAQGCQRGHPAG 57
C DGS GR +G GG G GG G G GC G +G
Sbjct: 50 CADGSGGRRRRTGGGGG----GGGGGGGCGGGGGGGGGGGCGGGGGSG 93
>11_06_0156 + 20748472-20748951
Length = 159
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 293 CWLPKQHRRSFRSRQPRPKY 352
CWLP+ RRS R R R K+
Sbjct: 6 CWLPRACRRSMRHRSCRTKF 25
>05_04_0183 - 18849749-18850225,18850305-18850431,18851762-18853515
Length = 785
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -1
Query: 146 LTIGSGGSRQLIGITSFGSAQGCQRGHPAGFARVTSFNSW 27
+ +G GG ++ TS A G R HP FA+ F SW
Sbjct: 13 VAVGGGGGQKTP--TSPRGAPGADRRHPRPFAKNLDFASW 50
>04_04_1156 -
31319747-31320085,31320556-31320706,31320795-31321026,
31321121-31321331,31321646-31321764,31321835-31322032,
31322163-31322364,31322456-31322832,31322937-31323007,
31326264-31326329,31326414-31326479,31326761-31326835,
31326944-31327018,31327115-31327186,31327683-31327904,
31328012-31328083,31328425-31328496,31329410-31329481,
31329716-31329896,31332132-31332237
Length = 992
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = -1
Query: 224 NVIIASTLCVDGSNGRSTCSGDSGGPLTIGSGGSRQLIGITSFGSAQGCQRGHPA-GFAR 48
N + ST C GS ++ + + GGPLT GS R + G A G P G +
Sbjct: 369 NCLQRSTPCFLGSPKTASFAVNCGGPLTSGSDNLRYQSDEVNLGDASYYITGEPTWGVST 428
Query: 47 VTSF 36
V F
Sbjct: 429 VGRF 432
>02_04_0166 - 20508656-20509092,20509282-20509372
Length = 175
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -1
Query: 197 VDGSNGRSTCSGDSGGPLTIGSGGSR-QLIGITSFGSAQGCQRGHPA 60
V GS+ R + G SGG G GG+R Q+ + + G+A RG+ A
Sbjct: 31 VRGSHARRSKRGISGGAGCGGGGGARGQVTAVGASGAAAEDARGYDA 77
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 70 PLWQP*ADPNDVIPIS*RLPPLPMVRGPPESPLQVLRP 183
P + P A P + + + PP+P + PP P Q P
Sbjct: 322 PYYAPPAQPTETMHQQYQAPPVPQPQAPPAPPQQYQTP 359
>01_01_0082 + 625198-625719
Length = 173
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/50 (38%), Positives = 21/50 (42%)
Frame = +1
Query: 49 LAKPAGWPLWQP*ADPNDVIPIS*RLPPLPMVRGPPESPLQVLRPLEPST 198
L P G P DV+P PP P V PP SP V P P+T
Sbjct: 40 LPSPCGTTCTYASPPPPDVLPTPVYYPPPPPVYYPPPSPPPVAYP-PPTT 88
>09_04_0130 -
14905044-14905505,14905865-14905933,14906000-14906104,
14906625-14906690,14907080-14907268,14907353-14907439,
14907597-14908118
Length = 499
Score = 28.3 bits (60), Expect = 5.3
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 13/64 (20%)
Frame = -1
Query: 203 LCVDGSNGRSTCSGDSGG-------PLTIGSGGS----RQLIGITSFGSAQGCQRG--HP 63
+ + G GRS G GG PLT+GSGGS + L+ + SA G G +
Sbjct: 125 MMLQGLGGRSPAGGGGGGGDGGLLLPLTLGSGGSGGDVQALLKAAAANSAGGGDAGGVYG 184
Query: 62 AGFA 51
GFA
Sbjct: 185 GGFA 188
>05_02_0164 - 7240739-7243051,7243902-7244036,7244322-7245371
Length = 1165
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 149 PLTIGSGGSRQLIGITSFGSAQGCQRGHPAGFARVTSFNSW 27
PL+ G+ GSR L+ + G A+G + H ++ F+ W
Sbjct: 304 PLSSGASGSRVLLTTRNEGVARGMRAQHLHPVEKLDRFDGW 344
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 626 CGASLLTNTRSVTAAHC 576
CG+ ++T TRSVT A C
Sbjct: 275 CGSRIITTTRSVTVASC 291
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 547 SSPSLLAQLTSSPEAPGSPPP 485
SS S + +SSP AP SPPP
Sbjct: 7 SSTSSSSSASSSPRAPSSPPP 27
>06_03_1249 -
28688997-28689248,28689469-28689533,28690016-28690093,
28691480-28691824,28693314-28693510,28695601-28696601
Length = 645
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 31 ELKDVTLAKPAGWPLWQP*ADPNDVIPIS*RLPPLPMVRGPPESP 165
E D L + PL + DP DV+ + PP P GPP+ P
Sbjct: 143 ECVDTWLDAHSTCPLCRSRVDPEDVLLLP--EPPKPSTTGPPDPP 185
>02_01_0377 +
2728892-2729187,2729483-2729544,2730516-2730570,
2730784-2730858,2730980-2731054,2731155-2731202,
2731548-2732357,2732450-2732498,2733157-2733266,
2733381-2733488,2733920-2733980
Length = 582
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 94 PNDVIPIS*RLPPLPMVRGPPESPLQVLRPLEP 192
P +IP+ P P V PPE +Q++RP+ P
Sbjct: 517 PPVLIPVPGAGPLGPFVPAPPEVVMQMMRPVMP 549
>01_06_1531 +
38024757-38024790,38025592-38025803,38026111-38026248,
38026405-38026449,38026499-38026591,38028072-38028815
Length = 421
Score = 27.9 bits (59), Expect = 7.0
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +1
Query: 109 PIS*RLPPLPMVRGPP---ESPLQVLR-PLEPSTQRVEAMITLFPNVRAQTALVMTWRLT 276
P+ +L P+P+ + P S + VL P +P +++ I A M WRL
Sbjct: 96 PVMPKLNPVPLPKQPQFVHHSDMHVLHTPADPMHYQLDPCI-------ATEGSAMVWRLC 148
Query: 277 WRFCWLLAPEAAS 315
+ CW + EA +
Sbjct: 149 FECCWPWSSEATN 161
>08_02_1243 - 25527523-25527960,25527993-25528604
Length = 349
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 334 PASEGPPMLLREPTTNKNAK*ASRSLPTPSAPA 236
P+S G P + P T A SR P+PS A
Sbjct: 90 PSSRGAPTMCSSPPTQSAAPPGSRCSPSPSPTA 122
>06_03_0543 + 21967787-21970261
Length = 824
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Frame = -1
Query: 251 AVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGGPLT---IGSGGSRQLIGITS-FGSAQ 84
+V +R + N++ C DG + G L GSGGS+ L+G T F A
Sbjct: 559 SVISRIYHTNLVRVWGFCSDGPHRILVSEFVENGSLDKILFGSGGSQNLLGWTQRFNIAL 618
Query: 83 GCQRG 69
G +G
Sbjct: 619 GVAKG 623
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 27.5 bits (58), Expect = 9.2
Identities = 22/58 (37%), Positives = 27/58 (46%)
Frame = +1
Query: 31 ELKDVTLAKPAGWPLWQP*ADPNDVIPIS*RLPPLPMVRGPPESPLQVLRPLEPSTQR 204
E +TL K PL P P+ V P + PP P R PP +PL +R PS R
Sbjct: 103 EALTITLPKKTPSPL-TPSPTPSPVTPPP-QQPPQPEPRRPPAAPLPGVR-TPPSPPR 157
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +1
Query: 58 PAGWPLWQP*ADPNDVIPIS*RLPPLPMVRGPPESPLQVLRP 183
PA P Q A P IP+ PP V+ PP P+QV P
Sbjct: 65 PAPSPQQQRVASPPPTIPVKFS-PPAAPVKVPPPPPVQVPPP 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,203,505
Number of Sequences: 37544
Number of extensions: 357605
Number of successful extensions: 1924
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1918
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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