Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13d19
(626 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 61 7e-10
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 54 6e-08
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 50 2e-06
Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical pr... 38 0.004
AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 38 0.004
AL110484-17|CAB54408.1| 586|Caenorhabditis elegans Hypothetical... 30 1.6
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 29 2.1
X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic int... 29 3.6
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi... 29 3.6
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi... 29 3.6
U50197-2|AAA91255.2| 624|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 28 6.3
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 28 6.3
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 28 6.3
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 27 8.3
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 27 8.3
AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical ... 27 8.3
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 60.9 bits (141), Expect = 7e-10
Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 6/207 (2%)
Frame = -1
Query: 626 CGASLLTNTRSVTAAHCWRTRRAQARQFTLALGTANIFSGGTRVTTSNVQMHGSYNMDTL 447
CG SL+ +TAAHC+ R + +++ +G SG T+ V +H YN+
Sbjct: 84 CGGSLIDPNFVLTAAHCFAKDR-RPTSYSVRVGGHRSGSGSPHRVTA-VSIHPWYNIGFP 141
Query: 446 HN-DVAIIN-HNHVGFTNNIQRINLASGSNNXXXXXXXXXXXGRTSDAASGANNQQKRQV 273
+ D AI+ H V + + I L S ++ S + R++
Sbjct: 142 SSYDFAIMRIHPPVNTSTTARPICLPSLP--AVENRLCVVTGWGSTIEGSSLSAPTLREI 199
Query: 272 SLQVITNAVCAR--TFGNNVIIASTLCVDGSNGR-STCSGDSGGPLTIGSGGSRQLIGIT 102
+ +++ C+ + + + S LC S G+ +C GDSGGPL G +L G+
Sbjct: 200 HVPLLSTLFCSSLPNYIGRIHLPSMLCAGYSYGKIDSCQGDSGGPLMCARDGHWELTGVV 259
Query: 101 SFGSAQGCQR-GHPAGFARVTSFNSWI 24
S+G GC R G P + V S ++WI
Sbjct: 260 SWGI--GCARPGMPGVYGNVHSASTWI 284
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 54.4 bits (125), Expect = 6e-08
Identities = 58/222 (26%), Positives = 90/222 (40%), Gaps = 17/222 (7%)
Frame = -1
Query: 626 CGASLLTNTRSVTAAHCWRTRRAQARQFTLALGTANIFSGGTRVTTSNVQMHGSYNMDTL 447
CGA+++ + VTAAHC + Q R F N + + +H YN T
Sbjct: 66 CGATVIDDFWLVTAAHC--ALQLQTRSFVYVREPKN--NRERSFSVKEAYIHSGYNNQTA 121
Query: 446 HNDVAIINHNHVGFTNNIQRINLASGSN-------NXXXXXXXXXXXGRTSDAASGANNQ 288
ND+A++ + I+ + L + N +S N+Q
Sbjct: 122 DNDIALLRISSDLSKLGIKPVCLVHDDSKLLKQYKNGVVIGYGLTLGEDSSGEPKLINSQ 181
Query: 287 QKRQVSLQVITNAVCARTFGN----NVIIASTLCVDGSNGRSTCSGDSGGPLTI-GSGGS 123
+ S+ +I++ C +T+ +V I G+ T GDSGGPL I S G
Sbjct: 182 TLQSTSVPIISDDDCVKTWRFLSLLSVKITGYQICAGAYLHGTAPGDSGGPLLIHKSNGE 241
Query: 122 RQLIGITSFGSAQGC-----QRGHPAGFARVTSFNSWIRARI 12
IGITS+G A G Q P + R++ + WI+ I
Sbjct: 242 YVQIGITSYG-ADGLDGVIDQGKFPGVYTRISKYVPWIQGVI 282
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 49.6 bits (113), Expect = 2e-06
Identities = 53/212 (25%), Positives = 84/212 (39%), Gaps = 7/212 (3%)
Frame = -1
Query: 626 CGASLLTNTRSVTAAHCWRT-RRAQARQFTLALGTANIFSGGTRVT-TSNVQMHGSYNMD 453
CGAS+L T +TAAHC+ R + + + N G ++ + + Y D
Sbjct: 54 CGASILDKTHLITAAHCFEEDERVSSYEVVVGDWDNNQTDGNEQIFYLQRIHFYPLYK-D 112
Query: 452 TLHNDVAIINHNHVGFTNNIQRINLASGSNNXXXXXXXXXXXGRTSDAASGANNQQKRQV 273
+D+AI+ + G N + S + + + G ++ Q
Sbjct: 113 IFSHDIAILEIPYPGIEFNEYAQPICLPSKDFVYTPGRQCVV--SGWGSMGLRYAERLQA 170
Query: 272 SLQVITNAV-CARTFG-NNVIIASTLCVDG-SNGRSTCSGDSGGPLTI-GSGGSRQLIGI 105
+L I N C + + + S C G +C GDSGGP G+ L G+
Sbjct: 171 ALIPIINRFDCVNSSQIYSSMSRSAFCAGYLEGGIDSCQGDSGGPFACRREDGAFVLAGV 230
Query: 104 TSFGSAQGC-QRGHPAGFARVTSFNSWIRARI 12
S+G GC Q+ P + V + SWI A I
Sbjct: 231 ISWG--DGCAQKKQPGIYTMVAPYLSWISAII 260
>Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical
protein F31D4.6 protein.
Length = 292
Score = 38.3 bits (85), Expect = 0.004
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = -1
Query: 227 NNVIIASTLCVDGSNGRSTCSGDSGGPLTI--GSGGSRQLIGITSFGSAQGCQRGHPAGF 54
++ I A+++ V + TC GDSGG L + G LI ITSFG+ +GC A F
Sbjct: 216 DDFICATSMNVSNYSAPRTCHGDSGGGLEYRDDNYGRAFLIAITSFGT-RGCPSNMLARF 274
Query: 53 ARVTSF 36
RV +
Sbjct: 275 TRVDMY 280
>AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like
protease protein 5 protein.
Length = 331
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -1
Query: 275 VSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGGPLTIGSGGSRQ--LIGIT 102
++L T A C +G ++ S C ++ CSGDSGG LT S + +I I
Sbjct: 236 LTLATETLATCEENWGTSIPFDS-FCTAEEEDKNVCSGDSGGGLTFHQSDSAREFIIAIV 294
Query: 101 SFGS 90
S+GS
Sbjct: 295 SYGS 298
>AL110484-17|CAB54408.1| 586|Caenorhabditis elegans Hypothetical
protein Y38E10A.17 protein.
Length = 586
Score = 29.9 bits (64), Expect = 1.6
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = -1
Query: 317 SDAASGANNQQKRQVSLQVITNAVCARTFGNNVI---IASTLCVDGSNGRSTCSGDSGGP 147
+ AA+G NN S +V + A+ FG + I + GS G G SGG
Sbjct: 419 TSAANGGNNAGGGGSSAEVRSVGFGAQQFGGSQFARPIPAGGGGGGSGGYGAGGGGSGGY 478
Query: 146 LTIGSGGSRQLIGITSFGSA 87
G+GG+R S+GS+
Sbjct: 479 GAGGAGGARNSASNGSYGSS 498
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 492 GDPGASGEDVSCAKSEGELTSLGSPGPP 575
G+PGA G+D K +GE G PGPP
Sbjct: 201 GEPGAPGKDGE--KGKGEPGPAGPPGPP 226
>X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 636
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 446 HNDVAIINHNHVGFTNNIQRINLASGSNN 360
HN++A+ N + ++ +QRINL NN
Sbjct: 203 HNEIALKNERSLNVSDLLQRINLLQTENN 231
>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
filament, c protein2, isoform a protein.
Length = 1128
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 446 HNDVAIINHNHVGFTNNIQRINLASGSNN 360
HN++A+ N + ++ +QRINL NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857
>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
filament, c protein2, isoform b protein.
Length = 1248
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 446 HNDVAIINHNHVGFTNNIQRINLASGSNN 360
HN++A+ N + ++ +QRINL NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857
>U50197-2|AAA91255.2| 624|Caenorhabditis elegans Hypothetical
protein F25E2.2 protein.
Length = 624
Score = 28.7 bits (61), Expect = 3.6
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Frame = -3
Query: 411 WLHQQHPAHQPSQWKQQLCWYLGLGCRLRKDLRCCFGSQQP-TKTPSEPPGHYQRRL-RP 238
+L +Q PAHQ Q K+Q C C +C ++ P E + R++ R
Sbjct: 530 FLEEQEPAHQKEQNKEQDCPINSKSCEKCSHSKCEKCAKHPHHHCKCEDQKEFNRKIVRA 589
Query: 237 HVWKQCDHC--LHP 202
K CD C HP
Sbjct: 590 LCPKTCDICNETHP 603
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +3
Query: 492 GDPGASGEDVSCAKSEGELTSLGSPGPP 575
G+PGA G+ A S GE G PGPP
Sbjct: 122 GNPGADGD----AGSPGEAGGAGPPGPP 145
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +3
Query: 492 GDPGASGEDVSCAKSEGELTSLGSPGPP 575
G+PGA G+ A S GE G PGPP
Sbjct: 122 GNPGADGD----AGSPGEAGGAGPPGPP 145
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -1
Query: 323 RTSDAASGANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGG 150
R + AA+G+N Q +Q Q + C + V+ + + DG G ST G GG
Sbjct: 2071 RNAAAAAGSNVQFIQQQQQQQQSGKNCGQGQSFVVMGSQSSSNDGQGGASTVGGGGGG 2128
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -1
Query: 323 RTSDAASGANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGG 150
R + AA+G+N Q +Q Q + C + V+ + + DG G ST G GG
Sbjct: 2071 RNAAAAAGSNVQFIQQQQQQQQSGKNCGQGQSFVVMGSQSSSNDGQGGASTVGGGGGG 2128
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 492 GDPGASGEDVSCAKSEGELTSLGSPGPP 575
G+PGA G+ + G + G PGPP
Sbjct: 219 GNPGAPGQVTETPGTPGPAGAAGPPGPP 246
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 492 GDPGASGEDVSCAKSEGELTSLGSPGPP 575
G+PGA G+ + G + G PGPP
Sbjct: 229 GNPGAPGQVTETPGTPGPAGAAGPPGPP 256
>AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical
protein R155.2 protein.
Length = 1308
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 476 MHGSYNMDTLHNDVAIINHNHVGFTNNIQRIN 381
+H S N TL N I+N F ++Q+IN
Sbjct: 501 LHDSMNQHTLDNMSQIVNVTDAKFLESVQKIN 532
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,796,246
Number of Sequences: 27780
Number of extensions: 250340
Number of successful extensions: 1252
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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