Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13d19
(626 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precur... 44 1e-06
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 23 3.2
DQ067178-1|AAZ20250.1| 448|Apis mellifera conserved ATPase doma... 22 4.3
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 22 5.6
AY703618-1|AAU12614.1| 136|Apis mellifera wingless protein. 22 5.6
AY222546-1|AAP69221.1| 135|Apis mellifera wingless protein. 22 5.6
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 22 5.6
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 22 5.6
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 21 7.4
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 21 7.4
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 21 7.4
X72575-1|CAA51167.1| 168|Apis mellifera Apidaecin precursor pro... 21 9.8
DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor pro... 21 9.8
DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor pro... 21 9.8
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 9.8
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 21 9.8
AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled rec... 21 9.8
>AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precursor
protein.
Length = 405
Score = 44.0 bits (99), Expect = 1e-06
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Frame = -1
Query: 281 RQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGGPLTIGSGGSRQL--IG 108
++ +L ++T C + +GN I+ + +C + G+ C DSGGP+ + +++L IG
Sbjct: 311 QKTTLNMLTQVECYKYYGN--IMVNAMCAY-AKGKDACQMDSGGPVLWQNPRTKRLVNIG 367
Query: 107 ITSFGSAQGCQRGHPAGFARVTSFNSWI 24
I S+G+ G +P G +V S+ WI
Sbjct: 368 IISWGAECG---KYPNGNTKVGSYIDWI 392
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 22.6 bits (46), Expect = 3.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -3
Query: 408 LHQQHPAHQPSQWKQQ 361
+H QHP QP Q + Q
Sbjct: 172 MHTQHPHMQPQQGQHQ 187
>DQ067178-1|AAZ20250.1| 448|Apis mellifera conserved ATPase domain
protein protein.
Length = 448
Score = 22.2 bits (45), Expect = 4.3
Identities = 6/15 (40%), Positives = 13/15 (86%)
Frame = -3
Query: 123 PSTDRYHIVRISSRL 79
P+T+ Y+I+ +++RL
Sbjct: 116 PNTEEYYIIEVNARL 130
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 21.8 bits (44), Expect = 5.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 578 CWRTRRAQARQFTLALGTANI 516
CW TR+ Q +GT+N+
Sbjct: 459 CWDTRKEYIPQNLGVIGTSNL 479
>AY703618-1|AAU12614.1| 136|Apis mellifera wingless protein.
Length = 136
Score = 21.8 bits (44), Expect = 5.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 3 RQLNSSPDPGVEGCDSGEAGRVASLATLS*SERC 104
RQ N + GV+GCD GR ++ ERC
Sbjct: 101 RQCNDT-SIGVDGCDLMCCGRGYKTQEVTVVERC 133
>AY222546-1|AAP69221.1| 135|Apis mellifera wingless protein.
Length = 135
Score = 21.8 bits (44), Expect = 5.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 3 RQLNSSPDPGVEGCDSGEAGRVASLATLS*SERC 104
RQ N + GV+GCD GR ++ ERC
Sbjct: 102 RQCNDT-SIGVDGCDLMCCGRGYKTQEVTVVERC 134
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 21.8 bits (44), Expect = 5.6
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 301 EPTTNKNAK*ASRS 260
EP TNKN K SRS
Sbjct: 239 EPGTNKNGKFFSRS 252
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 21.8 bits (44), Expect = 5.6
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = +3
Query: 498 PGAS---GEDVSCAKSEGELTSLGSPG 569
PG S GE S A ++G T+ SPG
Sbjct: 893 PGCSSKNGEPTSAAFAQGFATAASSPG 919
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 7.4
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 467 SYNMDTLHNDVAIINHNHVGFTNN 396
S + +T+HN+ N+N+ + NN
Sbjct: 83 SLSNNTIHNNNYKYNYNNNNYNNN 106
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 7.4
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 467 SYNMDTLHNDVAIINHNHVGFTNN 396
S + +T+HN+ N+N+ + NN
Sbjct: 83 SLSNNTIHNNNYKYNYNNNNYNNN 106
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.4 bits (43), Expect = 7.4
Identities = 12/49 (24%), Positives = 18/49 (36%)
Frame = +1
Query: 109 PIS*RLPPLPMVRGPPESPLQVLRPLEPSTQRVEAMITLFPNVRAQTAL 255
P+S +PP P + P++ P P + P V T L
Sbjct: 759 PLSVSIPPPPSAQNVPQNTNSQAIPRIPILPMIPVYCVPVPQVNDSTIL 807
>X72575-1|CAA51167.1| 168|Apis mellifera Apidaecin precursor
protein.
Length = 168
Score = 21.0 bits (42), Expect = 9.8
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = -3
Query: 333 RLRKDLRCCFGSQQPTKTPSEPPGHYQRRLRP 238
RLR++ G+ +P P P H + R P
Sbjct: 115 RLRREPEAEPGNNRPVYIPQPRPPHPRLRREP 146
>DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 21.0 bits (42), Expect = 9.8
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2
Query: 281 VFVGCWLP 304
VFV CWLP
Sbjct: 335 VFVVCWLP 342
>DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 21.0 bits (42), Expect = 9.8
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2
Query: 281 VFVGCWLP 304
VFV CWLP
Sbjct: 335 VFVVCWLP 342
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.0 bits (42), Expect = 9.8
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -2
Query: 547 SSPSLLAQLTSSPEAPGSPPPMSR 476
S PS + ++ EAP PP R
Sbjct: 961 SDPSDTVTIITAEEAPSGPPTSIR 984
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 21.0 bits (42), Expect = 9.8
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -3
Query: 120 STDRYHIVRISSRLPERPPCRLRQSHILQLL 28
+T R RLP PP R+R+ + LL
Sbjct: 624 TTKRDGTQETEERLPPLPPKRIRKMPSMPLL 654
>AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled
receptor protein.
Length = 399
Score = 21.0 bits (42), Expect = 9.8
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2
Query: 281 VFVGCWLP 304
VFV CWLP
Sbjct: 335 VFVVCWLP 342
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,542
Number of Sequences: 438
Number of extensions: 3371
Number of successful extensions: 22
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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