Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13d17
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2...   170   1e-43
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa...   165   3e-42
SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1...    29   0.61 
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   1.4  
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo...    26   4.3  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    26   4.3  
SPAC16E8.03 |gna1|spgna1|glucosamine-phosphate N-acetyltransfera...    26   4.3  

>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score =  170 bits (414), Expect = 1e-43
 Identities = 80/115 (69%), Positives = 94/115 (81%)
 Frame = -2

Query: 554 TPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVS 375
           T  QIVGDDLTVTN KR+ TA++KK  N LLLKVNQIGSVTES++A  ++ + GWG MVS
Sbjct: 313 TDFQIVGDDLTVTNVKRLRTAIDKKCANALLLKVNQIGSVTESLNAVRMSYEAGWGVMVS 372

Query: 374 HRSGETEDTFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYAG 210
           HRSGET DTFI+ L VG+  GQ+K+GAPCRSERLAKYN++LRIEEELG    YAG
Sbjct: 373 HRSGETADTFISHLTVGIGAGQLKSGAPCRSERLAKYNELLRIEEELGSEGVYAG 427


>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 440

 Score =  165 bits (402), Expect = 3e-42
 Identities = 75/115 (65%), Positives = 96/115 (83%)
 Frame = -2

Query: 554 TPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVS 375
           T ++++ DDLTVTN KR++ A+E K  N LL+K+NQIGS++E+IDA  +AKK GWG MVS
Sbjct: 314 TKVEVIADDLTVTNVKRLSKAIELKCANALLVKINQIGSLSETIDAANMAKKAGWGLMVS 373

Query: 374 HRSGETEDTFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYAG 210
           HRSGET+D+FIA L VGL  GQ+K+GAPCRSERLAKYN++LRIE+ LG +A YAG
Sbjct: 374 HRSGETDDSFIAHLAVGLEAGQMKSGAPCRSERLAKYNELLRIEDNLGDSAIYAG 428


>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 415

 Score = 28.7 bits (61), Expect = 0.61
 Identities = 20/62 (32%), Positives = 32/62 (51%)
 Frame = -2

Query: 503 IATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVG 324
           I  A+ +K CN +L + + IG VT    AH+   K   GT++    G T+   ++ L+ G
Sbjct: 40  IDEAIFEKNCNRMLDRASDIG-VT--FRAHVKTHKTIEGTLLQLGDGRTKAVVVSTLMEG 96

Query: 323 LS 318
            S
Sbjct: 97  FS 98


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +3

Query: 156  TEFYVFLREFLDRSTEVLP--GVFGVDAKFLFNAQNLVV-LGETLRATRGAGLD 308
            + FY  + E   RS+EVLP      +DAK    A+ +++    T  A  GA LD
Sbjct: 1630 SSFYSLIHESFSRSSEVLPTSSDTNLDAKRAEEAEMIMIETPPTAEANTGAKLD 1683


>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 318 HGSD-QDRRPVSLGASRQVQPNSAH*RGTWRQ 226
           +GSD   RRP  LG  ++V  +    +G+WR+
Sbjct: 52  YGSDITPRRPKQLGLPKEVNTSECIDQGSWRK 83


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -1

Query: 324 FVHGS-DQDRRPVSLGASRQVQPN 256
           FV GS +Q+RRP+S      +QPN
Sbjct: 519 FVQGSGNQNRRPISFPVISNMQPN 542


>SPAC16E8.03 |gna1|spgna1|glucosamine-phosphate
           N-acetyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 123 KKVVLTMFVLNKQFNAYHVLQDCSE 49
           K +VLT+  L    N+Y V+ DCS+
Sbjct: 60  KLMVLTLIKLAFSLNSYKVILDCSD 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,214,316
Number of Sequences: 5004
Number of extensions: 43138
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)