Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13d17
(555 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193... 196 1e-50
09_03_0117 - 12486672-12486818,12487438-12487488,12487583-124877... 167 4e-42
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877... 155 2e-38
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429... 137 5e-33
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781... 124 4e-29
04_04_1032 - 30259180-30260519,30260650-30260720,30261099-302621... 29 3.3
06_03_0067 - 16167420-16167845,16168291-16168406,16168634-161688... 28 5.8
04_03_0648 - 18393142-18393174,18393259-18393341,18393569-183936... 27 7.6
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 27 7.6
>06_01_0262 -
1930552-1930632,1931096-1931152,1931236-1931287,
1931373-1931461,1931551-1931601,1931696-1931890,
1932015-1932095,1932205-1932267,1933045-1933119,
1933194-1933352,1933353-1933463,1933536-1933616,
1933721-1933807,1933920-1933967,1934357-1934421,
1935002-1935065,1935220-1935288
Length = 475
Score = 196 bits (477), Expect = 1e-50
Identities = 93/120 (77%), Positives = 103/120 (85%)
Frame = -2
Query: 548 IQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHR 369
+QIVGDDL VTNP R+A A+ +K CN LLLKVNQIGSVTESI+A ++K+ GWG M SHR
Sbjct: 353 VQIVGDDLLVTNPTRVAKAISEKTCNALLLKVNQIGSVTESIEAVRMSKRAGWGVMASHR 412
Query: 368 SGETEDTFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYAGKNFRRPV 189
SGETEDTFIADL VGLSTGQIKTGAPCRSERLAKYNQ+LRIEEELG A YAG+ FR PV
Sbjct: 413 SGETEDTFIADLSVGLSTGQIKTGAPCRSERLAKYNQLLRIEEELGDAAVYAGEKFRAPV 472
>09_03_0117 -
12486672-12486818,12487438-12487488,12487583-12487729,
12488037-12488354,12488450-12488604,12488941-12489248,
12490644-12491038
Length = 506
Score = 167 bits (407), Expect = 4e-42
Identities = 81/99 (81%), Positives = 87/99 (87%)
Frame = -2
Query: 548 IQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHR 369
IQIVGDDL VTNPKRIA A+ KKACN LLLKVNQIG+VTESI A L +K GWG MVSHR
Sbjct: 362 IQIVGDDLLVTNPKRIAEAIGKKACNALLLKVNQIGTVTESIQAALDSKAAGWGVMVSHR 421
Query: 368 SGETEDTFIADLVVGLSTGQIKTGAPCRSERLAKYNQIL 252
SGETED FIADL VGL++GQIKTGAPCRSERLAKYNQI+
Sbjct: 422 SGETEDNFIADLAVGLASGQIKTGAPCRSERLAKYNQIV 460
>03_02_0477 -
8770905-8770985,8771164-8771361,8771939-8772025,
8772094-8772179,8772270-8772368,8772431-8772551,
8773251-8773331,8773643-8773723,8773972-8774088,
8774185-8774256,8774621-8775055
Length = 485
Score = 155 bits (377), Expect = 2e-38
Identities = 71/116 (61%), Positives = 91/116 (78%)
Frame = -2
Query: 545 QIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRS 366
Q+VGDDL +++P+RI AV + CN L+LK NQ+G+VTE+I+ AK WG MVSHRS
Sbjct: 364 QVVGDDLLMSDPERIKRAVNEYTCNALVLKANQVGTVTEAIEVVRQAKDAHWGVMVSHRS 423
Query: 365 GETEDTFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYAGKNFR 198
G+T+D+FIADL VG + GQIK GAPCR E L+KYNQ+LRIEEELG + YAG+N+R
Sbjct: 424 GDTDDSFIADLAVGAAAGQIKAGAPCRGECLSKYNQLLRIEEELGSDGVYAGENWR 479
>10_02_0022 -
4290708-4290788,4291254-4291305,4291396-4291484,
4291565-4291615,4291699-4291893,4292010-4292090,
4292190-4292252,4292480-4292554,4292630-4292710,
4292784-4292888,4292977-4293057,4293156-4293242,
4293322-4293369,4293923-4293987,4294109-4294172,
4294828-4294896
Length = 428
Score = 137 bits (332), Expect = 5e-33
Identities = 73/120 (60%), Positives = 85/120 (70%)
Frame = -2
Query: 548 IQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHR 369
+QIVGDDL VTNP R+A A+++K+CN LLLKVNQIGSVTESI+A ++K+ GWG M SHR
Sbjct: 325 VQIVGDDLLVTNPTRVAKAIQEKSCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMTSHR 384
Query: 368 SGETEDTFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYAGKNFRRPV 189
SGETEDTFIADL VGL+T +LRIEEELG A YAG FR PV
Sbjct: 385 SGETEDTFIADLAVGLAT-------------------LLRIEEELGAAAVYAGAKFRAPV 425
>03_02_0365 -
7816966-7817046,7817441-7817492,7817590-7817678,
7817762-7817854,7817900-7818094,7818172-7818249,
7818353-7818415,7818806-7818880,7818958-7819038,
7819329-7819409,7819516-7819602,7819682-7819729,
7820317-7820381,7820566-7820629,7821254-7821322
Length = 406
Score = 124 bits (300), Expect = 4e-29
Identities = 75/134 (55%), Positives = 85/134 (63%), Gaps = 14/134 (10%)
Frame = -2
Query: 548 IQIVGDDLTVTNP--------------KRIATAVEKKACNCLLLKVNQIGSVTESIDAHL 411
+QIVGDDL VTNP +R+A A++ KACN LLLKVNQIGSVTESI+A
Sbjct: 289 VQIVGDDLLVTNPTFPCWLQYSNQFDLQRVAKAIKDKACNALLLKVNQIGSVTESIEAVK 348
Query: 410 LAKKNGWGTMVSHRSGETEDTFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELG 231
++K+ GWG M SHRSGETEDTFIADL VGLST +LRIEEELG
Sbjct: 349 MSKRAGWGVMTSHRSGETEDTFIADLAVGLST-------------------LLRIEEELG 389
Query: 230 VNAKYAGKNFRRPV 189
A YAG FR PV
Sbjct: 390 AAAVYAGAKFRAPV 403
>04_04_1032 -
30259180-30260519,30260650-30260720,30261099-30262118,
30263886-30264121
Length = 888
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = -3
Query: 250 ALKRNLASTPNTPGRTSVDRSKNSLKKT*NSVFLSYPHFDSNKKSSIDY 104
ALKR + T G S+DRS +SLK + V S P+ +S SS Y
Sbjct: 515 ALKRPMGKTD---GNISLDRSNSSLKGSLYRVNESNPNMESTGASSHQY 560
>06_03_0067 -
16167420-16167845,16168291-16168406,16168634-16168871,
16168903-16169033,16169100-16169289
Length = 366
Score = 27.9 bits (59), Expect = 5.8
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -2
Query: 542 IVGDDLTVTNPKRIATAVEKKACNCLLLKVNQ--IGSVTESIDAHLLAKKNGWGTMVSHR 369
+VGDDL PKR A ++ C ++ +Q IG + HL+A ++ V
Sbjct: 215 VVGDDLDNAVPKRDARFTNRRWC----VRDSQIVIGGAGMFVFQHLIATQSPATAAVMAG 270
Query: 368 SGETEDTFIADLVVGL 321
T+D A +VG+
Sbjct: 271 ESSTDDAAAAYTLVGI 286
>04_03_0648 -
18393142-18393174,18393259-18393341,18393569-18393662,
18393746-18393880,18394190-18394222,18394302-18394396,
18394494-18394539,18394639-18394719,18395464-18395517,
18395809-18395951,18397645-18397804
Length = 318
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 270 GETLRATRGAGLDLTRGQTNYQVGNKGIFGLTRSV-RDHCAPSV 398
G+ + GL GQ NY G+ GLT++V R++ + ++
Sbjct: 205 GKIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAREYASRNI 248
>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = -2
Query: 326 GLSTGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYAGKNFRRP 192
G STG KTG R LAK N E G A NF P
Sbjct: 1239 GRSTGNRKTGVSARRPNLAKINTNALNNTENGRYKGRAPSNFSSP 1283
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,046,496
Number of Sequences: 37544
Number of extensions: 284552
Number of successful extensions: 659
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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