Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13d17
(555 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68318-8|CAH10783.1| 465|Caenorhabditis elegans Hypothetical pr... 217 6e-57
Z68318-3|CAD57704.1| 337|Caenorhabditis elegans Hypothetical pr... 217 6e-57
Z68318-2|CAA92692.1| 434|Caenorhabditis elegans Hypothetical pr... 217 6e-57
Z93389-6|CAB07669.2| 300|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical p... 27 6.9
AL110500-9|CAE54920.1| 586|Caenorhabditis elegans Hypothetical ... 27 6.9
AL110500-8|CAB60430.1| 551|Caenorhabditis elegans Hypothetical ... 27 6.9
AF039035-2|AAB94162.1| 304|Caenorhabditis elegans Hypothetical ... 27 6.9
>Z68318-8|CAH10783.1| 465|Caenorhabditis elegans Hypothetical
protein T21B10.2c protein.
Length = 465
Score = 217 bits (529), Expect = 6e-57
Identities = 101/121 (83%), Positives = 111/121 (91%)
Frame = -2
Query: 554 TPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVS 375
T IQ+VGDDLTVTNPKRI TA++KK+CNCLLLKVNQIGSVTESI+A L++ NGWG MVS
Sbjct: 343 TSIQLVGDDLTVTNPKRIQTAIDKKSCNCLLLKVNQIGSVTESIEAAKLSRANGWGVMVS 402
Query: 374 HRSGETEDTFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYAGKNFRR 195
HRSGETEDTFIADLVVGL+TGQIKTGAPCRSERLAKYNQ+LRIEEELG +A YAG NFR
Sbjct: 403 HRSGETEDTFIADLVVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGADAVYAGHNFRN 462
Query: 194 P 192
P
Sbjct: 463 P 463
>Z68318-3|CAD57704.1| 337|Caenorhabditis elegans Hypothetical
protein T21B10.2b protein.
Length = 337
Score = 217 bits (529), Expect = 6e-57
Identities = 101/121 (83%), Positives = 111/121 (91%)
Frame = -2
Query: 554 TPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVS 375
T IQ+VGDDLTVTNPKRI TA++KK+CNCLLLKVNQIGSVTESI+A L++ NGWG MVS
Sbjct: 215 TSIQLVGDDLTVTNPKRIQTAIDKKSCNCLLLKVNQIGSVTESIEAAKLSRANGWGVMVS 274
Query: 374 HRSGETEDTFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYAGKNFRR 195
HRSGETEDTFIADLVVGL+TGQIKTGAPCRSERLAKYNQ+LRIEEELG +A YAG NFR
Sbjct: 275 HRSGETEDTFIADLVVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGADAVYAGHNFRN 334
Query: 194 P 192
P
Sbjct: 335 P 335
>Z68318-2|CAA92692.1| 434|Caenorhabditis elegans Hypothetical
protein T21B10.2a protein.
Length = 434
Score = 217 bits (529), Expect = 6e-57
Identities = 101/121 (83%), Positives = 111/121 (91%)
Frame = -2
Query: 554 TPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVS 375
T IQ+VGDDLTVTNPKRI TA++KK+CNCLLLKVNQIGSVTESI+A L++ NGWG MVS
Sbjct: 312 TSIQLVGDDLTVTNPKRIQTAIDKKSCNCLLLKVNQIGSVTESIEAAKLSRANGWGVMVS 371
Query: 374 HRSGETEDTFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYAGKNFRR 195
HRSGETEDTFIADLVVGL+TGQIKTGAPCRSERLAKYNQ+LRIEEELG +A YAG NFR
Sbjct: 372 HRSGETEDTFIADLVVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGADAVYAGHNFRN 431
Query: 194 P 192
P
Sbjct: 432 P 432
>Z93389-6|CAB07669.2| 300|Caenorhabditis elegans Hypothetical
protein T13F3.5 protein.
Length = 300
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -2
Query: 551 PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKK 399
P+++ L P I +K C CL V+++G+ SI H+L+++
Sbjct: 14 PLEVANQILEKLEP--IYQLTSRKVCKCLKTSVDKLGTHFYSITFHILSRE 62
>Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical
protein Y69H2.10b protein.
Length = 975
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 353 LRSHQICERPLCPIRSSWPASEHQLTLLRCRSD*PSIADSCMPSSQ 490
++S +ICERP CP +S + T +C + ++ D P S+
Sbjct: 711 MQSVEICERPPCPTKSWCIVQTNVDTFTKCPKN-QTMTDCLNPCSE 755
>AL110500-9|CAE54920.1| 586|Caenorhabditis elegans Hypothetical
protein Y87G2A.8b protein.
Length = 586
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 343 IKVSSVSPDL*ETIVPHPFFLASK*ASIDSVTLPI*LTFNSRQLHAFFSTAVAIR 507
+K S +SP+ I+PH F +K S+ LP+ F L AF+ + ++
Sbjct: 482 LKSSGMSPESIAKILPHKVFEGNK--PTTSIVLPVVTPFTLGALIAFYEHKIFVQ 534
>AL110500-8|CAB60430.1| 551|Caenorhabditis elegans Hypothetical
protein Y87G2A.8a protein.
Length = 551
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 343 IKVSSVSPDL*ETIVPHPFFLASK*ASIDSVTLPI*LTFNSRQLHAFFSTAVAIR 507
+K S +SP+ I+PH F +K S+ LP+ F L AF+ + ++
Sbjct: 447 LKSSGMSPESIAKILPHKVFEGNK--PTTSIVLPVVTPFTLGALIAFYEHKIFVQ 499
>AF039035-2|AAB94162.1| 304|Caenorhabditis elegans Hypothetical
protein C53A3.1 protein.
Length = 304
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 305 KTGAPCRSERLAKYNQILRIEEELGVNAKYAGKNF 201
K G P R ERL+++ I+ +E+ +NA A N+
Sbjct: 86 KNGGPARIERLSRHVMIIETSDEV-INAYEAMNNY 119
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,320,820
Number of Sequences: 27780
Number of extensions: 247935
Number of successful extensions: 619
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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