Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13d17
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    24   0.90 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   0.90 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   0.90 
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   2.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.7  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   4.8  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    22   4.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   8.4  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.2 bits (50), Expect = 0.90
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 306 DLTRGQTNYQVGNKGIFGLTRS 371
           D   G  N+Q G +GIFG++ S
Sbjct: 243 DYNIGGLNFQWGEEGIFGMSLS 264


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.2 bits (50), Expect = 0.90
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -2

Query: 536 GDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTE 429
           G+   +TN +R+A+   +  CN   L V+   +V +
Sbjct: 521 GEICLLTNARRVASVRAETYCNLFSLSVDHFNAVLD 556


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.2 bits (50), Expect = 0.90
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -2

Query: 536 GDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTE 429
           G+   +TN +R+A+   +  CN   L V+   +V +
Sbjct: 489 GEICLLTNARRVASVRAETYCNLFSLSVDHFNAVLD 524


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 337 SAIKVSSVSPDL*ET 381
           S IKV S+SPDL ET
Sbjct: 184 SNIKVISISPDLVET 198


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 193 RSKNSLKKT*NSVFLSYPHFDSNKKSS 113
           RS +S +    S+  S PH D NK+ S
Sbjct: 36  RSPSSSRSPSPSLLTSQPHQDHNKEKS 62


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 256 IWLYLARRSERHG 294
           +W+Y ++ SE HG
Sbjct: 198 LWVYKSKASEEHG 210


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 256 IWLYLARRSERHG 294
           +W+Y ++ SE HG
Sbjct: 166 LWVYKSKASEEHG 178


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 12  SENK*FNTFNTHIHYSLEEHDRH 80
           S+N+  N  N   H+S + ++RH
Sbjct: 438 SDNQNNNQHNDQAHHSSKSNNRH 460


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,479
Number of Sequences: 438
Number of extensions: 2837
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)