Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13d11
(712 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex det... 27 0.23
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 26 0.31
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 26 0.31
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 23 3.8
DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex det... 22 5.0
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 22 6.6
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 22 6.6
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 21 8.7
DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex det... 21 8.7
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 21 8.7
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 21 8.7
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 21 8.7
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 21 8.7
>DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 26.6 bits (56), Expect = 0.23
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 428 SLGNNYRARYYDGRISNDHGRNSRLFFNI 514
SL NNY Y+ +N + N +L++NI
Sbjct: 84 SLSNNYNYSNYNNYNNNYNNYNKKLYYNI 112
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 26.2 bits (55), Expect = 0.31
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 368 VHWARGHNGGVSHDHRGYT 424
+HW GHNGG S GYT
Sbjct: 1422 LHWKSGHNGGAS--LTGYT 1438
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 26.2 bits (55), Expect = 0.31
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 368 VHWARGHNGGVSHDHRGYT 424
+HW GHNGG S GYT
Sbjct: 1418 LHWKSGHNGGAS--LTGYT 1434
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 22.6 bits (46), Expect = 3.8
Identities = 7/26 (26%), Positives = 15/26 (57%)
Frame = +2
Query: 386 HNGGVSHDHRGYTRSLGNNYRARYYD 463
+N ++++ Y + NNY+ YY+
Sbjct: 330 NNNNYNNNYNNYNNNNYNNYKKLYYN 355
>DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 5.0
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +2
Query: 404 HDHRGYTRSLGNNYRARYYD 463
H++ Y + NNY+ YY+
Sbjct: 91 HNNNNYNNNNYNNYKKLYYN 110
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 21.8 bits (44), Expect = 6.6
Identities = 6/20 (30%), Positives = 12/20 (60%)
Frame = +2
Query: 404 HDHRGYTRSLGNNYRARYYD 463
+++ Y + NNY+ YY+
Sbjct: 335 NNYNNYNNNYNNNYKKLYYN 354
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 21.8 bits (44), Expect = 6.6
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -1
Query: 703 RPKRGXYESPDVG 665
R KRG YE P VG
Sbjct: 608 RFKRGKYEEPTVG 620
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 8.7
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +2
Query: 401 SHDHRGYTRSLGNNYRARYYD 463
++++ Y + NNYR YY+
Sbjct: 90 NYNNNNYKKLYCNNYRKLYYN 110
>DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex
determiner protein.
Length = 178
Score = 21.4 bits (43), Expect = 8.7
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = -1
Query: 691 GXYESPDVGPALVEAPIVPSPVHVGPLVP 605
G + +GP + +P H+GPL P
Sbjct: 125 GNFPPRPMGPWISIQEQIPRFRHIGPLTP 153
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 21.4 bits (43), Expect = 8.7
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -1
Query: 640 VPSPVHVGPLVPGQLTPLVHI 578
VP P+H G P + P + I
Sbjct: 346 VPVPIHCGNFPPRPMGPWISI 366
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 21.4 bits (43), Expect = 8.7
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = -1
Query: 691 GXYESPDVGPALVEAPIVPSPVHVGPLVP 605
G + +GP + +P H+GPL P
Sbjct: 366 GNFPPRPMGPWISIQEQIPRFRHIGPLTP 394
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 21.4 bits (43), Expect = 8.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 71 VIWLFFYILEMISNDNWFHSDWLDGTDDDRL 163
V+ L Y+L+ S F DGT++D L
Sbjct: 578 VVALVLYLLDRFSPFGRFKLANTDGTEEDAL 608
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 21.4 bits (43), Expect = 8.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 705 AGQNVDXTRAQMSVLP*SKLPSSHPQSTSDPSFLDN 598
AG + AQMS +P + S ++ SFLDN
Sbjct: 1251 AGTSNSRGAAQMSKVPRDVSEGIYDGSGANGSFLDN 1286
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,689
Number of Sequences: 438
Number of extensions: 2494
Number of successful extensions: 27
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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