Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13d09
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    25   0.82 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   2.5  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 12/61 (19%), Positives = 30/61 (49%)
 Frame = -1

Query: 392 IIICVYKVFAVLCQMLCNQLKFNEMESFSNIIN*FVITILQ*LESVSQVYFSKIILVTYH 213
           III  Y  F ++C +    +  N + + + ++  +++T++     +  ++ + I L T  
Sbjct: 281 IIIMWYSPFGIMCLIAGKIMSINNLTATAQMLGLYMVTVI-----LGLLFHALITLPTIF 335

Query: 212 W 210
           W
Sbjct: 336 W 336


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 160 LIKSTKTELSGNKNNNTIK 104
           LIK+T+   S N+NNN  K
Sbjct: 411 LIKNTRCAKSNNQNNNQNK 429


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,044
Number of Sequences: 438
Number of extensions: 3472
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)