Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13d08
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos...   130   1e-31
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac...    44   2e-05
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...    30   0.24 
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    29   0.73 
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    27   2.9  
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein...    27   2.9  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   3.9  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    26   5.1  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   6.8  
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar...    25   6.8  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   9.0  

>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
           Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score =  130 bits (315), Expect = 1e-31
 Identities = 63/174 (36%), Positives = 99/174 (56%)
 Frame = -3

Query: 616 TRPVIVNAXWQYVKTHRLQDPHEREYIACDRYLEQIFGAPRVKXAEVPARLGALLHAPDP 437
           TRP IV+  WQY+K HRLQD  E+  I CD+ L  +F A R+    +P  +   L   DP
Sbjct: 222 TRPDIVSYLWQYIKFHRLQDMEEKRLINCDKALRDLFEADRLYFPRIPELMNRFLEPIDP 281

Query: 436 IVINHVIAVEPPHDAKQTACYDIDVEVDDTLKAQMNNFLLSTANQQEIQGLDSKIHETVD 257
           IVI + I V   H  ++   +DI +  +D   +Q+ +FL +  +Q +I+ +D K+ E + 
Sbjct: 282 IVIPYTINVSE-HTVEKVTIFDIRINTEDPRHSQIRSFLATMMSQDKIRSIDDKLTELIQ 340

Query: 256 TINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDLKSMSGGASGNPEEERRAQFY 95
            I   ++  +F   FS+ P +FI +W+ SQSRDL+ +  G + N  E+R A +Y
Sbjct: 341 AITYSQSKYDFMKKFSESPIEFINEWIESQSRDLEIVLDGTNMNYAEKRSADYY 394


>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
           complex subunit Spp27|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 233

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = -3

Query: 616 TRPVIVNAXWQYVKTHRLQDPHEREYIACDRYLEQIF 506
           +RP  V   W+Y+K H LQDP+++  I CD  L+ +F
Sbjct: 137 SRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVF 173


>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 12/53 (22%), Positives = 32/53 (60%)
 Frame = -3

Query: 304 QQEIQGLDSKIHETVDTINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDLKSM 146
           QQ+I  L+++++E  +T+  L+  R+F+ +  ++ +  +Q  L +    +++M
Sbjct: 178 QQQITSLETQLYEVNETMFGLERERDFYFNKLREIEILVQTHLTTSPMSMENM 230


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 219 KKNSRFVFNWLMVSTVSWILESRPWISCWLAVLSR 323
           KKNS+ ++N L+  T++W   S  W+S   ++  +
Sbjct: 28  KKNSKHLYNLLITRTLTWPSLSIQWLSAMESITEK 62


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 319 LSTANQQEIQGLDSKIHETVDTINQLKTNRE 227
           LST    E  G   K+HE  DT+N  K  +E
Sbjct: 388 LSTTEGHET-GYSRKLHEARDTLNDFKAEKE 417


>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
           Mad3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -3

Query: 310 ANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSKDPQQFIQKWL 176
           AN  E +GL  K  E      ++K     FL F +  QQF  +WL
Sbjct: 157 ANYFESRGLFQKADEVYQKGKRMKAKP--FLRFQQKYQQFTHRWL 199


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = -3

Query: 370  IDVEVDDTLKAQMNNFLLSTANQQEIQGLDSKIH----ETVDTINQLKTNREFFLSFSKD 203
            + +++ D L A  NN++        +  LD  +H    E++  +N+   +R   LS  +D
Sbjct: 1571 LSMDLQDALNAYFNNYVSEENRSHTVLVLDKSVHQFPWESLPCLNRQSVSRVPSLSILRD 1630


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -3

Query: 316 STANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSK 206
           STA+++ I  L  + HE++  ++  K N+  F  FS+
Sbjct: 113 STADEKLISQLGEEAHESLLKVHIEKANKHLFSLFSR 149


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 543 SRSCGSCRRCVFTYCH 590
           S  CG+C+RC+  Y H
Sbjct: 413 SYHCGACKRCINRYDH 428


>SPAC222.11 |hem13||coproporphyrinogen III oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = +2

Query: 158 VSGLTDEPLLDELLRILAEAQEELAVCFQLVDG 256
           +S +T EP+  ++ +++ + Q+E+    + VDG
Sbjct: 1   MSDITVEPIGKQMEKLILDVQQEIVAGLEAVDG 33


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 3/102 (2%)
 Frame = -3

Query: 544 EYIACDRYLEQIFGAPRVKXAEVPARLGALLH-APDPIVINHVIAVEPPHDAKQTACYDI 368
           + I+   Y      A + K A   + +G+  +    P      +AV  PHD  Q   YD 
Sbjct: 401 DIISTHDYALDANSASQTKKAAFGSPIGSSTYPTSSPAPFWKYVAVPNPHDWPQVGSYD- 459

Query: 367 DVEVDDTLKAQMNNFLLSTANQQEIQGLDSKIHET--VDTIN 248
              +        ++ + S   Q   + +D ++H+   VD +N
Sbjct: 460 --TISPYRNPVNSHLIYSQIQQSSPKKIDEQLHDLQGVDLVN 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,478,005
Number of Sequences: 5004
Number of extensions: 25569
Number of successful extensions: 139
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)