Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13d08
(627 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0689 + 18746735-18748296,18748401-18748485 131 5e-31
04_04_1498 + 34002677-34003104,34004427-34004532,34004643-340048... 39 0.004
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788... 37 0.015
09_01_0169 - 2452623-2452754,2454585-2454761 36 0.020
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 35 0.046
08_02_1165 + 24830547-24831154,24832048-24832159,24832250-248324... 35 0.046
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 33 0.14
01_01_0295 + 2421347-2421682 32 0.32
02_01_0235 - 1563805-1563930,1565093-1565362 31 0.57
09_03_0072 + 12073250-12073855 30 1.3
03_01_0340 - 2680860-2682197 29 2.3
06_01_0757 + 5659081-5659605,5659694-5659919,5659994-5660333,566... 29 4.0
03_01_0392 + 3051469-3051876,3052414-3052832,3053992-3054061,305... 29 4.0
02_04_0134 - 20109610-20109984 28 5.3
04_04_1578 + 34569091-34569966 28 7.0
04_04_0775 - 27989704-27990281,27990407-27990653,27990743-279908... 28 7.0
01_01_0046 - 331758-332627 28 7.0
09_01_0016 - 376742-376883,377973-378964 27 9.2
06_02_0238 - 13357877-13357954,13358186-13358302,13358537-133586... 27 9.2
01_06_0880 + 32687018-32687060,32687142-32687219,32687323-326875... 27 9.2
>04_03_0689 + 18746735-18748296,18748401-18748485
Length = 548
Score = 131 bits (316), Expect = 5e-31
Identities = 63/174 (36%), Positives = 104/174 (59%)
Frame = -3
Query: 616 TRPVIVNAXWQYVKTHRLQDPHEREYIACDRYLEQIFGAPRVKXAEVPARLGALLHAPDP 437
TR ++ A WQY+K +LQ+P + + CD L+++FG +++ A + ++ L P P
Sbjct: 345 TRSRVIAALWQYIKAKKLQNPTDPSFFMCDPQLKKVFGEDKLRFAMLSQKISQHLSPPPP 404
Query: 436 IVINHVIAVEPPHDAKQTACYDIDVEVDDTLKAQMNNFLLSTANQQEIQGLDSKIHETVD 257
I + H I + + A +ACYD+ V+V L+ +M+ FL +T ++I+ D I ++
Sbjct: 405 INLEHKIKLSG-NGAHASACYDVIVDVPFPLQKEMSAFLANTEKHKDIEACDEVISASIK 463
Query: 256 TINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDLKSMSGGASGNPEEERRAQFY 95
I++ + R FFL FS+ P +FI + SQS+DLK ++G A+ N E ERRA FY
Sbjct: 464 KIHEHRRRRAFFLGFSQSPVEFINALIASQSKDLKLIAGEANRNIERERRADFY 517
>04_04_1498 +
34002677-34003104,34004427-34004532,34004643-34004811,
34004901-34005088,34005644-34005763
Length = 336
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -3
Query: 616 TRPVIVNAXWQYVKTHRLQDPHEREYIACDRYLEQIFG 503
+R IV WQY++ + LQDP ++ I C+ L +FG
Sbjct: 175 SRTQIVKQLWQYIRQNNLQDPDDKRKIICNDELRVVFG 212
>09_06_0048 +
20477076-20478547,20478643-20478722,20478880-20478893,
20480164-20481199,20481275-20481402,20481673-20481732,
20481774-20481878,20481971-20482055,20482315-20482470,
20482562-20482831,20482877-20483671,20483844-20483903,
20484062-20485134
Length = 1777
Score = 36.7 bits (81), Expect = 0.015
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = -3
Query: 583 YVKTHRLQDPHEREYIACDRYLEQIFGAPRVKXAEVPARLGA--LLHAPDPIVI--NHVI 416
Y+K L+DP + I CD L+ +FG RV E+ L + L+ P+ I NH
Sbjct: 708 YIKRENLRDPRRKSQIICDSMLKSLFGKARVGHFEMLKLLESHFLMSEVSPVEIDDNHGG 767
Query: 415 AVEP 404
V+P
Sbjct: 768 VVDP 771
>09_01_0169 - 2452623-2452754,2454585-2454761
Length = 102
Score = 36.3 bits (80), Expect = 0.020
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = -3
Query: 589 WQYVKTHRLQDPHEREYIACDRYLEQI-FGAPRVKXAEVP 473
W ++K++ LQDP R + CD L+ + G +V+ +E+P
Sbjct: 50 WSHIKSNNLQDPSNRNIVNCDDKLKTVLLGRSKVELSELP 89
>10_08_0608 +
19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 35.1 bits (77), Expect = 0.046
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -3
Query: 586 QYVKTHRLQDPHEREYIACDRYLEQIFGAPRVKXAEVPARLGALLHAPDPI 434
+YVK L+DP + I CD L +F P V E+ L HA + +
Sbjct: 402 EYVKQKNLRDPRRKSQIICDARLANLFRKPHVGHFEMLKLLEMHFHAKETV 452
>08_02_1165 +
24830547-24831154,24832048-24832159,24832250-24832421,
24832486-24832700,24833922-24833996,24834367-24834390
Length = 401
Score = 35.1 bits (77), Expect = 0.046
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 601 VNAXWQYVKTHRLQDPHEREYIACDRYLEQIFG 503
V W ++K++ L+DP I CD L+Q+FG
Sbjct: 356 VKRVWDHIKSNNLEDPANPTMILCDSKLKQLFG 388
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 613 RPVIVNAXWQYVKTHRLQDPHEREYIACDRYLEQIF 506
R IV W Y++ + LQDP+ + I C+ L +F
Sbjct: 238 RTEIVKQLWAYIRRNNLQDPNNKRKIICNDELRLVF 273
>03_01_0085 +
690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -3
Query: 583 YVKTHRLQDPHEREYIACDRYLEQIFGAPRVKXAEVPARLGALLHAPDPIVIN 425
Y+K + L+DP + I CD L ++F RV E+ L +P +N
Sbjct: 381 YIKQNNLRDPQRKSQIICDSRLHRLFRKTRVAHFEMLKLLEMHFIVSEPSAVN 433
>01_01_0295 + 2421347-2421682
Length = 111
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -3
Query: 484 AEVPARLGALLHAPDPIVINHVIAVEPPHDAKQTACYDI 368
+++ A LG A ++IN V A +PP ++ACYD+
Sbjct: 18 SKIAAALGLFGVATASLIINLVAAFDPPQGFAESACYDL 56
>02_01_0235 - 1563805-1563930,1565093-1565362
Length = 131
Score = 31.5 bits (68), Expect = 0.57
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -3
Query: 622 KQTRPVIVNAXWQYVKTHRLQDPHEREYIACDRYLEQIF-GAPRVKXAEV 476
+ +R V W ++K + LQ+P + I CD L+ +F G +V E+
Sbjct: 70 EMSRAGAVKLIWNHIKANGLQNPANKREINCDDKLKSLFAGKDKVGMMEI 119
>09_03_0072 + 12073250-12073855
Length = 201
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/56 (39%), Positives = 26/56 (46%)
Frame = +3
Query: 402 GGSTAMTWLMTMGSGACSRAPRRAGTSAXLTRGAPKICSR*RSQAMYSRSCGSCRR 569
GG+ WL + A AP RAG L R + CS A + RSCG CRR
Sbjct: 56 GGAPGQDWLAAYRARA---APARAG----LRRNSADYCSV--ETASFLRSCGLCRR 102
>03_01_0340 - 2680860-2682197
Length = 445
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 320 AQHRQPAGDPRPRLQDPRDCGHHQPVENKP 231
++ ++P PRPR DP G + VE KP
Sbjct: 155 SRRKEPPRPPRPRPVDPDGAGDNAQVERKP 184
>06_01_0757 +
5659081-5659605,5659694-5659919,5659994-5660333,
5660677-5661025,5661121-5661723
Length = 680
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/62 (19%), Positives = 33/62 (53%)
Frame = -3
Query: 334 MNNFLLSTANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDL 155
++N++L + + + + + + + ++ +RE ++S+S D QF+ +W + +D
Sbjct: 345 LHNWILENGSDEFVNDEKTCMGKRTEGTSEEGGSREKYISWSDDATQFMLEWYIELCKDK 404
Query: 154 KS 149
S
Sbjct: 405 PS 406
>03_01_0392 + 3051469-3051876,3052414-3052832,3053992-3054061,
3054923-3055016,3056587-3056907,3057298-3057403,
3058807-3058887,3059336-3059402,3059715-3060239,
3060328-3060553,3060628-3060967,3061311-3061659,
3061755-3062357
Length = 1202
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/62 (19%), Positives = 33/62 (53%)
Frame = -3
Query: 334 MNNFLLSTANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDL 155
++N++L + + + + + + + ++ +RE ++S+S D QF+ +W + +D
Sbjct: 867 LHNWILENGSDEFVNDEKTCMGKRTEGTSEEGGSREKYISWSDDATQFMLEWYIELRKDK 926
Query: 154 KS 149
S
Sbjct: 927 PS 928
>02_04_0134 - 20109610-20109984
Length = 124
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +3
Query: 423 WLMTMGSGACSRAPRRAGTSAXLTRGAPKICSR*RSQAMYSRSCGSCRRCVFTYC 587
W + GS A SRA RR S +GA K R + +++ CG CR+ +C
Sbjct: 7 WTLRAGSNAASRAERRQACS---EQGAAKQAR--RLERRWAKQCG-CRQPQSEWC 55
>04_04_1578 + 34569091-34569966
Length = 291
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 323 PAQHRQPAGDPRPRLQDP 270
PAQ PAG P PR +DP
Sbjct: 249 PAQKAPPAGPPPPRARDP 266
>04_04_0775 -
27989704-27990281,27990407-27990653,27990743-27990837,
27990918-27992388,27993142-27993194,27993295-27993430
Length = 859
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 283 DSKIHETVDTINQLKTNREFFLSFSKDP 200
+++ +E +D + L N EFFL KDP
Sbjct: 201 EARPNEFLDALQLLSANEEFFLMLLKDP 228
>01_01_0046 - 331758-332627
Length = 289
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -2
Query: 608 RHSERXVAVREDAPPAGPARARVHRLRPLP 519
RH + APP GP R+H+ P P
Sbjct: 46 RHPHPTIPAARAAPPLGPTNRRLHQQPPPP 75
>09_01_0016 - 376742-376883,377973-378964
Length = 377
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = -3
Query: 439 PIVINHVIAVEPPHDAKQTACYDIDVEVDDTLKAQMNNFLLSTANQQEIQGLDSKIHETV 260
P+ N+ I + PP++ + + D D + + LKA N ++S++ + Q DS ET+
Sbjct: 121 PLPTNNAIVLAPPNNQESESDSDSDDDQESALKA---NKIVSSSGDDD-QESDSSDDETL 176
Query: 259 DTINQLK 239
+ K
Sbjct: 177 PALQANK 183
>06_02_0238 -
13357877-13357954,13358186-13358302,13358537-13358641,
13359301-13359393,13359801-13359888,13359979-13360028,
13361147-13361205,13361297-13361516,13361611-13361691,
13364034-13364111,13364203-13364298,13364370-13364435
Length = 376
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/68 (19%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = -3
Query: 469 RLGALLHAPDPIVINHVIAVEPPHDAKQTACYDIDVEVDDTLK-AQMN-NFLLSTANQQE 296
R+G+ + + +V+NHV+ + H C ++ ++ LK Q+ ++++ +++ +
Sbjct: 306 RIGSNVKIVNSVVMNHVVIEDGCHIQGSVICNNVQLQERAVLKDCQVGAGYIVTASSEHK 365
Query: 295 IQGLDSKI 272
+ L K+
Sbjct: 366 AESLSKKV 373
>01_06_0880 +
32687018-32687060,32687142-32687219,32687323-32687532,
32687868-32689744
Length = 735
Score = 27.5 bits (58), Expect = 9.2
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Frame = -3
Query: 397 DAKQTACYDIDVEVDDTLKAQMNNFLLSTA--NQQEIQGLDSKIHETVDTINQLKTNREF 224
DAK A D D+ K+ + ++S N ++ GLDS + + T+N+ K E
Sbjct: 388 DAKDAAVKDPADNSDEEKKSDCTHDIVSLVEVNGKKFTGLDSFLSYQLSTVNEEKVQTEV 447
Query: 223 --FLSFSKDPQQFIQKWLVSQSRDLK 152
L P Q I+ + RDLK
Sbjct: 448 REGLFRPSSPLQLIEDF---HKRDLK 470
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,362,301
Number of Sequences: 37544
Number of extensions: 218558
Number of successful extensions: 989
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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