Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13d08
         (627 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069383-1|AAL39528.1|  515|Drosophila melanogaster LD09078p pro...   281   7e-76
AE014298-1855|AAF48235.1|  515|Drosophila melanogaster CG4303-PA...   281   7e-76
AF071503-1|AAC28455.1|  515|Drosophila melanogaster brahma assoc...   279   3e-75

>AY069383-1|AAL39528.1|  515|Drosophila melanogaster LD09078p
           protein.
          Length = 515

 Score =  281 bits (688), Expect = 7e-76
 Identities = 129/177 (72%), Positives = 151/177 (85%)
 Frame = -3

Query: 625 HKQTRPVIVNAXWQYVKTHRLQDPHEREYIACDRYLEQIFGAPRVKXAEVPARLGALLHA 446
           H QTRPVI++A WQY+KTH+LQD HEREYI CD+YLEQIF   R+K AE+P RL  LLH 
Sbjct: 309 HTQTRPVIISALWQYIKTHKLQDAHEREYINCDKYLEQIFSCQRMKFAEIPQRLNPLLHP 368

Query: 445 PDPIVINHVIAVEPPHDAKQTACYDIDVEVDDTLKAQMNNFLLSTANQQEIQGLDSKIHE 266
           PDPIVINH I  E   + KQTACYDIDVEVDDTLK QMN+FL+STA+QQEIQGLD+KIHE
Sbjct: 369 PDPIVINHFI--ESGAENKQTACYDIDVEVDDTLKNQMNSFLMSTASQQEIQGLDTKIHE 426

Query: 265 TVDTINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDLKSMSGGASGNPEEERRAQFY 95
           TVDTINQ+KTNREFFLSF+KDPQ FI +W++S++RDLK M+   +GNPEEERRA+FY
Sbjct: 427 TVDTINQMKTNREFFLSFAKDPQMFIHRWIISETRDLKLMT-DVAGNPEEERRAEFY 482


>AE014298-1855|AAF48235.1|  515|Drosophila melanogaster CG4303-PA
           protein.
          Length = 515

 Score =  281 bits (688), Expect = 7e-76
 Identities = 129/177 (72%), Positives = 151/177 (85%)
 Frame = -3

Query: 625 HKQTRPVIVNAXWQYVKTHRLQDPHEREYIACDRYLEQIFGAPRVKXAEVPARLGALLHA 446
           H QTRPVI++A WQY+KTH+LQD HEREYI CD+YLEQIF   R+K AE+P RL  LLH 
Sbjct: 309 HTQTRPVIISALWQYIKTHKLQDAHEREYINCDKYLEQIFSCQRMKFAEIPQRLNPLLHP 368

Query: 445 PDPIVINHVIAVEPPHDAKQTACYDIDVEVDDTLKAQMNNFLLSTANQQEIQGLDSKIHE 266
           PDPIVINH I  E   + KQTACYDIDVEVDDTLK QMN+FL+STA+QQEIQGLD+KIHE
Sbjct: 369 PDPIVINHFI--ESGAENKQTACYDIDVEVDDTLKNQMNSFLMSTASQQEIQGLDTKIHE 426

Query: 265 TVDTINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDLKSMSGGASGNPEEERRAQFY 95
           TVDTINQ+KTNREFFLSF+KDPQ FI +W++S++RDLK M+   +GNPEEERRA+FY
Sbjct: 427 TVDTINQMKTNREFFLSFAKDPQMFIHRWIISETRDLKLMT-DVAGNPEEERRAEFY 482


>AF071503-1|AAC28455.1|  515|Drosophila melanogaster brahma
           associated protein 60 kDa protein.
          Length = 515

 Score =  279 bits (683), Expect = 3e-75
 Identities = 128/177 (72%), Positives = 150/177 (84%)
 Frame = -3

Query: 625 HKQTRPVIVNAXWQYVKTHRLQDPHEREYIACDRYLEQIFGAPRVKXAEVPARLGALLHA 446
           H QTRPVI++A WQY+KTH+LQD HEREYI CD+YLEQIF   R+K AE+P RL  LLH 
Sbjct: 309 HTQTRPVIISALWQYIKTHKLQDAHEREYINCDKYLEQIFSCQRMKFAEIPQRLNPLLHP 368

Query: 445 PDPIVINHVIAVEPPHDAKQTACYDIDVEVDDTLKAQMNNFLLSTANQQEIQGLDSKIHE 266
           PDPIVINH I  E   + KQTACYDIDVEVDDTLK QMN+FL+STA+QQEIQGLD+KIHE
Sbjct: 369 PDPIVINHFI--ESGAENKQTACYDIDVEVDDTLKNQMNSFLMSTASQQEIQGLDTKIHE 426

Query: 265 TVDTINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDLKSMSGGASGNPEEERRAQFY 95
           TVDTINQ+ TNREFFLSF+KDPQ FI +W++S++RDLK M+   +GNPEEERRA+FY
Sbjct: 427 TVDTINQMNTNREFFLSFAKDPQMFIHRWIISETRDLKLMT-DVAGNPEEERRAEFY 482


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,878,107
Number of Sequences: 53049
Number of extensions: 345052
Number of successful extensions: 1649
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1641
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2600432100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)