Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13d06
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   181   1e-46
SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|c...    26   4.3  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   7.6  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   10.0 

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  181 bits (440), Expect = 1e-46
 Identities = 90/173 (52%), Positives = 121/173 (69%), Gaps = 1/173 (0%)
 Frame = -2

Query: 673 IYAILAIGVIRIYCLSSSYIHCRYRYDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQIN 494
           ++A+L+I ++ +   S          DTRAYF++AT++IA+PTGIKIF  LAT+ G  I 
Sbjct: 280 LWAMLSIALLGLMVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQ 339

Query: 493 YNP-NIL*RLGFVFLFTVGGLTGVILANSSIDITLHDTYYVVAHFHYVLSIGAVFAIIGR 317
           ++   +L  +GF+ LFT+GGLTGVIL+NS +DI  HDTY+VVAHFHYVLS+GA+F + G 
Sbjct: 340 WSRVPMLYAIGFLILFTIGGLTGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGA 399

Query: 316 FIN*YPLFTGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPD 158
           +    P   GL  N  +  IQF+ +FIGVNI F PQHFLGL G+PRR  DYP+
Sbjct: 400 YY-WSPKMFGLMYNETLASIQFWILFIGVNIVFGPQHFLGLNGMPRRIPDYPE 451


>SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 222

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -2

Query: 349 SIGAVFAIIGRFIN*YPLFTGLSLNSYILKIQFFTIFIGVNITFFPQHF 203
           SI  V    G  I  +P   G+++   ILK+ F   F    + FF  HF
Sbjct: 127 SIKEVIVACGAGIRSFPQKRGVNMLYAILKLTFVNAFAIPLLMFFRSHF 175


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 293 YRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIFRL 165
           +RPF KFL  K  IF + YW +  +  T +      T  I+ L
Sbjct: 201 FRPFPKFLSVKAIIFAS-YWQQTVLSITNWLGLLNGTGWIYSL 242


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -2

Query: 436 LTGVILANSSIDITLHDTYYVV 371
           L  ++LAN+++D T+H  Y+++
Sbjct: 657 LDHILLANATLDKTVHSAYWLM 678


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,053,039
Number of Sequences: 5004
Number of extensions: 35080
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)