Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13d04
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    27   1.6  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    26   4.9  
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    25   6.5  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    25   8.6  

>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 389 QARRGARHAQQI*NREKQDFRIA 321
           Q    ++HA++I +REK+ FRIA
Sbjct: 69  QTAESSQHAEEILSREKEKFRIA 91


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 288 DDIK*IFELLTHKNTIFNKVLKKNIAYLILSYN 190
           +D K +FE+  + NTI   +L   I Y +LS N
Sbjct: 121 NDPKKVFEIALNGNTILGGILVAYILYNVLSPN 153


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
 Frame = +3

Query: 45  YFYNINNNKWLHYFDYN-----NIFFVLVMSH 125
           + + I N KW++  DYN      I FVLVM H
Sbjct: 98  HLFFILNYKWIYRKDYNLCLNQKIAFVLVMLH 129


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 276 ILYHLHRLRSSVIAACDTEVLFLSV 350
           I +HL RLR+S ++  D   +FL++
Sbjct: 514 IQFHLDRLRNSSLSTTDAAEIFLAL 538


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,286,083
Number of Sequences: 5004
Number of extensions: 45101
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)