Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13d04
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0016 - 112407-112660,113182-113323                               31   0.72 
04_04_1097 - 30859963-30860302,30862130-30863058                       29   2.2  
12_02_1052 - 25698263-25698394,25698587-25698679,25698945-256989...    29   2.9  
04_03_0818 + 20014685-20014687,20014792-20014831,20014988-200150...    29   3.8  
04_03_0548 - 17035394-17035749,17035761-17036295,17036325-170364...    28   5.1  

>07_01_0016 - 112407-112660,113182-113323
          Length = 131

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -2

Query: 465 GRRGANSPTDARSAT---TRLTSGTWSPTGPTWRTTCSADI 352
           GRRG     +A + T   T L +G W   G  WR  C+AD+
Sbjct: 30  GRRGGGG-AEASALTLVVTGLEAGQWRGVGRVWRRPCAADV 69


>04_04_1097 - 30859963-30860302,30862130-30863058
          Length = 422

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = -3

Query: 500 HGGFSAAFGTQRGGVARTRLQTRALQRPGLPPGHGHLQARRGARHA 363
           HGG S A       V  +   TR L  PGL    GH+ A     H+
Sbjct: 56  HGGGSVAMSVDNSSVGSSDSHTRMLNHPGL---RGHVAANYSVGHS 98


>12_02_1052 -
           25698263-25698394,25698587-25698679,25698945-25698995,
           25699074-25699258,25699361-25699407,25699704-25699918
          Length = 240

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
 Frame = -2

Query: 486 CCFRDAAGRRGANSP--TDARSATTRLTSGTWSPTGPTWRTTCSADIKQRETRLPYRR 319
           CC    +  R +  P    A S   R  S TW+P    +  T S    + + R P RR
Sbjct: 41  CCTAATSSTRRSRRPMRASASSRRRRTPSSTWTPRPSRYGGTPSISTSRGQPRFPRRR 98


>04_03_0818 +
           20014685-20014687,20014792-20014831,20014988-20015025,
           20015359-20015485,20015571-20015797,20015919-20016064,
           20016166-20016284,20016711-20016799,20016881-20017003,
           20017123-20017158,20017464-20017562,20017642-20017833
          Length = 412

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 417 RLTSGTWSPTGPTWRTTCSAD 355
           ++  G+W P+GP W+   S D
Sbjct: 385 KIGDGSWCPSGPEWKLAASGD 405


>04_03_0548 -
           17035394-17035749,17035761-17036295,17036325-17036458,
           17037053-17037134
          Length = 368

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 107 CPCHVPRHLQQSH 145
           C CH  RHLQQ+H
Sbjct: 311 CKCHAQRHLQQAH 323


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,922,101
Number of Sequences: 37544
Number of extensions: 264750
Number of successful extensions: 818
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)