Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13d04
         (613 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U36477-1|AAA91035.1|  664|Drosophila melanogaster neuron specifi...    28   8.6  
BT025207-1|ABF17898.1|  653|Drosophila melanogaster FI01106p pro...    28   8.6  
AF145627-1|AAD38602.1|  567|Drosophila melanogaster scratch prot...    28   8.6  
AE014298-484|AAF45840.1|  238|Drosophila melanogaster CG14421-PA...    28   8.6  
AE014296-729|AAF47819.1|  653|Drosophila melanogaster CG1130-PA ...    28   8.6  

>U36477-1|AAA91035.1|  664|Drosophila melanogaster neuron specific
           zinc finger transcriptionfactor protein.
          Length = 664

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 474 DAAGRRGANSPTDARSATTRLTSGTWSPTGPTWRTT 367
           +AA    +NS     SATT  TS  W P+ PT  TT
Sbjct: 87  EAATSHSSNSSNMEASATTT-TSKCWGPSSPTAGTT 121


>BT025207-1|ABF17898.1|  653|Drosophila melanogaster FI01106p
           protein.
          Length = 653

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 474 DAAGRRGANSPTDARSATTRLTSGTWSPTGPTWRTT 367
           +AA    +NS     SATT  TS  W P+ PT  TT
Sbjct: 87  EAATSHSSNSSNMEASATTT-TSKCWGPSSPTAGTT 121


>AF145627-1|AAD38602.1|  567|Drosophila melanogaster scratch
           protein.
          Length = 567

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 474 DAAGRRGANSPTDARSATTRLTSGTWSPTGPTWRTT 367
           +AA    +NS     SATT  TS  W P+ PT  TT
Sbjct: 87  EAATSHSSNSSNMEASATTT-TSKCWGPSSPTAGTT 121


>AE014298-484|AAF45840.1|  238|Drosophila melanogaster CG14421-PA
           protein.
          Length = 238

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = -2

Query: 459 RGANSPTDARSATTRLTSG---TWSPTGPTWRTTCSADIKQRETRLP 328
           +G++S T A   TT L S    T SPTGPT  T  S       T  P
Sbjct: 53  KGSSSSTTAAPTTTTLPSTSTVTTSPTGPTTSTGTSTTTTTPTTTSP 99


>AE014296-729|AAF47819.1|  653|Drosophila melanogaster CG1130-PA
           protein.
          Length = 653

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 474 DAAGRRGANSPTDARSATTRLTSGTWSPTGPTWRTT 367
           +AA    +NS     SATT  TS  W P+ PT  TT
Sbjct: 87  EAATSHSSNSSNMEASATTT-TSKCWGPSSPTAGTT 121


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,799,699
Number of Sequences: 53049
Number of extensions: 467498
Number of successful extensions: 1440
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1440
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2497240350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)