Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13d04
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53150-10|AAA96130.3|  433|Caenorhabditis elegans Hypothetical p...    31   0.65 
EU052683-1|ABU48856.1|  249|Caenorhabditis elegans heparan sulfa...    29   2.0  
EU052682-1|ABU48855.1|  278|Caenorhabditis elegans heparan sulfa...    29   2.0  
AF098987-1|AAC67432.1|  276|Caenorhabditis elegans Heparan sulph...    29   2.0  

>U53150-10|AAA96130.3|  433|Caenorhabditis elegans Hypothetical
           protein F20A1.9 protein.
          Length = 433

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = -2

Query: 396 SPTGPTWRTTCSADIKQRETRLPYRRQL*LNSVICVDDIK*IFELLTHKNTIF 238
           SP  P  RTT    I Q E  L YRR++  N  + +DD++    ++  KN +F
Sbjct: 370 SPPNPNSRTT----IFQNEEGLVYRRRMASNKCVYLDDLR---RMMNEKNQVF 415


>EU052683-1|ABU48856.1|  249|Caenorhabditis elegans heparan sulfate
           3-O sulfotransferaseisoform b protein.
          Length = 249

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 51  YNINNNKWLHYFDYNNIFFV 110
           Y+++ +KWL YFD  N  FV
Sbjct: 196 YDVHISKWLKYFDLKNFLFV 215


>EU052682-1|ABU48855.1|  278|Caenorhabditis elegans heparan sulfate
           3-O sulfotransferaseisoform a protein.
          Length = 278

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 51  YNINNNKWLHYFDYNNIFFV 110
           Y+++ +KWL YFD  N  FV
Sbjct: 196 YDVHISKWLKYFDLKNFLFV 215


>AF098987-1|AAC67432.1|  276|Caenorhabditis elegans Heparan
           sulphotransferase protein 3 protein.
          Length = 276

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 51  YNINNNKWLHYFDYNNIFFV 110
           Y+++ +KWL YFD  N  FV
Sbjct: 196 YDVHISKWLKYFDLKNFLFV 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,461,714
Number of Sequences: 27780
Number of extensions: 248935
Number of successful extensions: 704
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)