Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13d04
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   3.1  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   3.1  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   4.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   5.4  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   7.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   9.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.5  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 99  YYYNRNNVTIYYC*YYK 49
           Y YN NN    YC  YK
Sbjct: 89  YNYNNNNYKKLYCNNYK 105


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 99  YYYNRNNVTIYYC*YYK 49
           Y YN NN    YC  YK
Sbjct: 89  YNYNNNNYKKLYCNNYK 105


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 24  SINLTGDYFYNINNNKWLHYFDYNNI 101
           +I+   +Y YN NNN    Y++ N I
Sbjct: 89  TIHNNNNYKYNYNNNCKKLYYNINYI 114


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 78   HYFDYNNIFFVLVMSHAICNSPILFD 155
            HY D +N++ V     + C+S ++ D
Sbjct: 1469 HYPDLHNLYAVPTDKKSACDSKLIVD 1494


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 342  ETRLPYRRQL*LNSVICVD 286
            + R  YRR+L +N  +C D
Sbjct: 960  DARPAYRRRLNVNETVCSD 978


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 51  YNINNNKWLHYFDYNN 98
           YN  NN + +Y +YNN
Sbjct: 327 YNNYNNNYNNYNNYNN 342


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 99  YYYNRNNVTIYYC*YYK 49
           Y YN NN    YC  Y+
Sbjct: 89  YNYNNNNYKKLYCNNYR 105


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
            receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = -2

Query: 456  GANSPTDARSATTRLTSGTWSPTGPTWRTTCSADIKQR 343
            G N PT    A   +     +P  P       +DI+QR
Sbjct: 892  GLNDPTTVSLAVDTVARSNVTPRSPGRAWPGDSDIRQR 929


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -2

Query: 378 WRTTCSADIKQRETRLPYRRQL 313
           WR TC    K R    P  R+L
Sbjct: 371 WRLTCRKCFKSRTNLDPSNRKL 392


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 480 FRDAAGRRGANSPT 439
           F+D A R  ANSPT
Sbjct: 680 FQDVARRSVANSPT 693


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,626
Number of Sequences: 438
Number of extensions: 3241
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)