Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13d03
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   0.93 
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c...    28   0.93 
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   3.8  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   8.7  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +2

Query: 323  LNVLTLVNTISSAF--TSIYLLGASSLKIHIFIFTLFRKFYNSI-LLKINHNL 472
            LN++       + F  TS+Y L  +S K H   FTL +K  + +  LKI+  L
Sbjct: 1936 LNIVIKYRNFDNIFRETSLYTLTTTSFKTHSQAFTLLQKVVDQLDQLKIHETL 1988


>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 374

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 24/82 (29%), Positives = 39/82 (47%)
 Frame = +2

Query: 227 SVFNNVTIYLLFIR**Q*ILYLGLDILQYIIYLNVLTLVNTISSAFTSIYLLGASSLKIH 406
           +V N  T   LF R  Q +L   L+ +  I+  NV++ V  ++  F     L   +LK  
Sbjct: 121 NVKNVYTTLQLFPR--QDLLAYSLNQIVEILLGNVMSSVLPVADRFQFDLTLADQNLKAE 178

Query: 407 IFIFTLFRKFYNSILLKINHNL 472
            F+F +  K    IL +I ++L
Sbjct: 179 RFVFAIVHKDCMRILREIRYDL 200


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = +1

Query: 67   FLFIFYILKLYITYAFVICFLS----IIVILVFYLYKYKII*FRSLS 195
            F+F F  L   +    VIC+ S    I+++ +F+LY+Y  + +   S
Sbjct: 1020 FMFFFRNLFQIVFVLAVICYSSPMFMILIVPLFFLYRYNQVYYTQTS 1066


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -3

Query: 590  YILEIESNGASRN---DCICKILFMDIKLKKKNKPAIFYTQFIG 468
            +I  I  N AS     D   K +F  IK + KNK  +   +FIG
Sbjct: 1383 FIESITMNDASNQFKIDVFVKFIFPFIKNQMKNKNELIRQEFIG 1426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,133,196
Number of Sequences: 5004
Number of extensions: 39580
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)