Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13d03
         (616 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    33   0.80 
U95740-1|AAC31662.1| 1199|Homo sapiens Unknown gene product prot...    29   9.9  
AY247105-1|AAO72160.1| 1543|Homo sapiens ATP-binding cassette su...    29   9.9  
AY247065-1|AAO72161.1| 1543|Homo sapiens ATP-binding cassette su...    29   9.9  
AY028900-1|AAK30025.1| 1543|Homo sapiens ATP-binding cassette A1...    29   9.9  
AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens ...    29   9.9  

>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 33.1 bits (72), Expect = 0.80
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 46  INLCVYPFLFIFYILKLYI-TYAFVICFLSIIVILVFYLYKYKII 177
           I + +Y +++I+  +  YI TY ++  F+ I + L  YLY Y  I
Sbjct: 23  IYIYIYVYVYIYLYIYFYIFTYIYLYIFIYIYICLYIYLYIYLYI 67



 Score = 31.5 bits (68), Expect = 2.4
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 46  INLCVYPFLFIFYILKLYI-TYAFVICFLSIIVILVFYLYKYKII 177
           I + VY +L+I++ +  YI  Y F+  ++ + + L  YLY +  I
Sbjct: 27  IYVYVYIYLYIYFYIFTYIYLYIFIYIYICLYIYLYIYLYIFTYI 71


>U95740-1|AAC31662.1| 1199|Homo sapiens Unknown gene product
           protein.
          Length = 1199

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = +1

Query: 67  FLFIFYILKLYITYAFV--ICFLSIIVILVFYL 159
           F F+F+++ ++  + FV  + F+  IV+ VF++
Sbjct: 888 FFFVFFVIFIFFIFVFVQFVVFVFFIVVFVFFI 920


>AY247105-1|AAO72160.1| 1543|Homo sapiens ATP-binding cassette
            sub-family A member 10 protein.
          Length = 1543

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 43   SINLCVYPFLFIFYILKLYITYAFVICFLSIIVILVFYLYKYKII 177
            SI+L +Y F+F+ + L   + +  V+C +   V L+F  Y    I
Sbjct: 994  SIHL-IYYFIFLGFQLSWELMFVLVVCIIGCAVSLIFLTYVLSFI 1037


>AY247065-1|AAO72161.1| 1543|Homo sapiens ATP-binding cassette
            sub-family A member 10 protein.
          Length = 1543

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 43   SINLCVYPFLFIFYILKLYITYAFVICFLSIIVILVFYLYKYKII 177
            SI+L +Y F+F+ + L   + +  V+C +   V L+F  Y    I
Sbjct: 994  SIHL-IYYFIFLGFQLSWELMFVLVVCIIGCAVSLIFLTYVLSFI 1037


>AY028900-1|AAK30025.1| 1543|Homo sapiens ATP-binding cassette A10
            protein.
          Length = 1543

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 43   SINLCVYPFLFIFYILKLYITYAFVICFLSIIVILVFYLYKYKII 177
            SI+L +Y F+F+ + L   + +  V+C +   V L+F  Y    I
Sbjct: 994  SIHL-IYYFIFLGFQLSWELMFVLVVCIIGCAVSLIFLTYVLSFI 1037


>AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45698 fis, clone FEBRA2017811. ).
          Length = 415

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 304 FTIHHLFKRPYSRQHNQFCIHINIFIRSI*FKNTYIHFHI 423
           FT  H+ +R Y+ +H    +H N +I +    +++ H HI
Sbjct: 32  FTCTHIHRRTYTHRHTHTLMHTNKYIYTHMHIHSHAHRHI 71


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,913,299
Number of Sequences: 237096
Number of extensions: 1224566
Number of successful extensions: 1357
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1353
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6579110070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)