Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13c24
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    42   5e-05
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   8.3  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    25   8.3  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    25   8.3  

>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 42.3 bits (95), Expect = 5e-05
 Identities = 19/29 (65%), Positives = 22/29 (75%)
 Frame = -3

Query: 588 GGKQRVMYLLSHDDPNVRYEALLAVQKLM 502
           G KQR+M L+SH DP VR+EAL  VQ LM
Sbjct: 411 GAKQRIMDLMSHPDPEVRFEALSTVQLLM 439


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 308 LWFIKLNQT*KVDCLIKNTSIEVNIV 231
           LW I L Q    DCL+ N S+ V+++
Sbjct: 371 LWSIDLEQISPSDCLLDNYSLFVDLL 396


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 1   HINKWQLFNISLLNLHHLHDLTEC 72
           H  +W  F+   LNLH L+++T C
Sbjct: 74  HTGQWS-FSCRRLNLHLLNEITTC 96


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 201 ISEWLTLKLKYNIYFN*CVFNQAIYFLCLIK 293
           +S +LTLK K  IYF  C+ N   Y+ C ++
Sbjct: 541 VSFFLTLKGKKFIYFRICITN---YYRCNVR 568


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,196
Number of Sequences: 5004
Number of extensions: 45165
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)