Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13c23
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...   159   2e-40
SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding...    26   5.5  
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po...    25   7.3  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score =  159 bits (387), Expect = 2e-40
 Identities = 84/198 (42%), Positives = 109/198 (55%), Gaps = 2/198 (1%)
 Frame = -3

Query: 592 TAYQ**RDISREGTYQGKHTILVNKGLR*GXXXXXXXXXXXXXXXXXXXFHRRLSPNIEI 413
           T Y   RD+S E    G HT  V KGL+ G                   FH  LSP  E+
Sbjct: 63  TMYLWFRDMSTEANIHGAHTKAVTKGLKIGFMLFLISETFLFASIFWAFFHSSLSPTFEL 122

Query: 412 GRI*PPSRITP--FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRLFLTILLG 239
           G + PP  I     +P ++PLLNT+IL+ SG ++T AH+SLI  N     + L++TI L 
Sbjct: 123 GAVWPPVGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGLYMTIALS 182

Query: 238 FYFTILQAYEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLICYIRHLNNHFSKN 59
           F F   QAYEY  A FTI+D +YG++F+ ATG HGIH+I+GT+ LL+        H +  
Sbjct: 183 FLFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTILLLVATYNIYTYHLTNT 242

Query: 58  HHFGFEAAA*Y*HFVDVV 5
           HH GFE    Y HF DVV
Sbjct: 243 HHNGFECGIYYWHFCDVV 260


>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
           protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 279

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 142 FHGIHVIIGTLFLLICYIRHLNNHFSKNHHFGFEAAA*Y*HF 17
           +  I +  G +++   YIR + +H   + HF  EA A + HF
Sbjct: 130 YGNIKIFSGKIYIASQYIRTIKDHNEVHFHF-LEAIAVHLHF 170


>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -3

Query: 295 IENNFSQTKQRLFLTILLGFYFTILQAYE 209
           +  ++S T  RL++ ++ G Y + L++Y+
Sbjct: 8   LSRSYSTTSPRLYVDVVQGLYISSLKSYK 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,040,915
Number of Sequences: 5004
Number of extensions: 35816
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)