Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13c21
         (606 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC033651-1|AAH33651.1| 1049|Homo sapiens toll-like receptor 7 pr...    29   9.6  
AY358292-1|AAQ88659.1| 1049|Homo sapiens TLR7 protein.                 29   9.6  
AF240467-1|AAF60188.1| 1049|Homo sapiens toll-like receptor 7 pr...    29   9.6  

>BC033651-1|AAH33651.1| 1049|Homo sapiens toll-like receptor 7
           protein.
          Length = 1049

 Score = 29.5 bits (63), Expect = 9.6
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = -2

Query: 323 NKHLKLLTEAFVN*DHVQL-YFTLFACFTQIKTKFHIPVGLVVNKILRFVMYGNCDSLCL 147
           N  ++ LT+ F+  D  QL Y  L +   Q+  K   P   V+N +   +++ N   LC 
Sbjct: 732 NNQIRSLTKYFLQ-DAFQLRYLDLSSNKIQMIQKTSFPEN-VLNNLKMLLLHHN-RFLCT 788

Query: 146 QEKHWMFWWLSKTRKII 96
            +  W  WW++ T   I
Sbjct: 789 CDAVWFVWWVNHTEVTI 805


>AY358292-1|AAQ88659.1| 1049|Homo sapiens TLR7 protein.
          Length = 1049

 Score = 29.5 bits (63), Expect = 9.6
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = -2

Query: 323 NKHLKLLTEAFVN*DHVQL-YFTLFACFTQIKTKFHIPVGLVVNKILRFVMYGNCDSLCL 147
           N  ++ LT+ F+  D  QL Y  L +   Q+  K   P   V+N +   +++ N   LC 
Sbjct: 732 NNQIRSLTKYFLQ-DAFQLRYLDLSSNKIQMIQKTSFPEN-VLNNLKMLLLHHN-RFLCT 788

Query: 146 QEKHWMFWWLSKTRKII 96
            +  W  WW++ T   I
Sbjct: 789 CDAVWFVWWVNHTEVTI 805


>AF240467-1|AAF60188.1| 1049|Homo sapiens toll-like receptor 7
           protein.
          Length = 1049

 Score = 29.5 bits (63), Expect = 9.6
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = -2

Query: 323 NKHLKLLTEAFVN*DHVQL-YFTLFACFTQIKTKFHIPVGLVVNKILRFVMYGNCDSLCL 147
           N  ++ LT+ F+  D  QL Y  L +   Q+  K   P   V+N +   +++ N   LC 
Sbjct: 732 NNQIRSLTKYFLQ-DAFQLRYLDLSSNKIQMIQKTSFPEN-VLNNLKMLLLHHN-RFLCT 788

Query: 146 QEKHWMFWWLSKTRKII 96
            +  W  WW++ T   I
Sbjct: 789 CDAVWFVWWVNHTEVTI 805


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,611,221
Number of Sequences: 237096
Number of extensions: 1354746
Number of successful extensions: 1439
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1439
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6410414940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)