Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13c19
(361 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF125546-1|ABL73930.1| 237|Tribolium castaneum obstractor C2 pr... 23 1.3
EF125545-1|ABL73929.1| 274|Tribolium castaneum obstractor C1 pr... 23 1.3
EF222295-1|ABN79655.1| 146|Tribolium castaneum arginine vasopre... 21 2.9
AF225975-2|AAF74116.1| 302|Tribolium castaneum Tc-tailless prot... 21 3.8
AF219117-1|AAF71999.1| 406|Tribolium castaneum tailless ortholo... 21 3.8
AM292374-1|CAL23186.2| 659|Tribolium castaneum gustatory recept... 21 5.1
AM292345-1|CAL23157.2| 384|Tribolium castaneum gustatory recept... 21 5.1
AY043292-1|AAK96031.1| 323|Tribolium castaneum homeodomain tran... 20 6.7
U09586-2|AAC47271.1| 712|Tribolium castaneum protease, reverse ... 20 8.8
DQ138189-1|ABA03053.1| 162|Tribolium castaneum bursicon protein. 20 8.8
AM292365-1|CAL23177.1| 313|Tribolium castaneum gustatory recept... 20 8.8
AM292325-1|CAL23137.2| 309|Tribolium castaneum gustatory recept... 20 8.8
>EF125546-1|ABL73930.1| 237|Tribolium castaneum obstractor C2
protein.
Length = 237
Score = 22.6 bits (46), Expect = 1.3
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Frame = -2
Query: 180 DIRARTGLCPKQQKDGIECCYGVSVKETRC----RKHGGECFSKGYCSQSLIYE-EASDC 16
D RT L P E YG+ E++C GE S+ CS L Y+ EA C
Sbjct: 79 DCGDRTQLEPPISSPHCERLYGIFADESKCDVFWNCWNGEA-SRYQCSPGLAYDREARVC 137
>EF125545-1|ABL73929.1| 274|Tribolium castaneum obstractor C1
protein.
Length = 274
Score = 22.6 bits (46), Expect = 1.3
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Frame = -2
Query: 180 DIRARTGLCPKQQKDGIECCYGVSVKETRC----RKHGGECFSKGYCSQSLIYE-EASDC 16
D RT L P E YG+ E++C GE S+ CS L Y+ EA C
Sbjct: 79 DCGDRTQLEPPISSPHCERLYGIFADESKCDVFWNCWNGEA-SRYQCSPGLAYDREARVC 137
>EF222295-1|ABN79655.1| 146|Tribolium castaneum arginine
vasopressin-like peptide protein.
Length = 146
Score = 21.4 bits (43), Expect = 2.9
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Frame = -2
Query: 93 CRKHGGECFSKGY-CSQSLIYEEAS 22
CRK+ G C G CSQ + + S
Sbjct: 97 CRKNTGRCAFDGICCSQDSCHADKS 121
>AF225975-2|AAF74116.1| 302|Tribolium castaneum Tc-tailless
protein.
Length = 302
Score = 21.0 bits (42), Expect = 3.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 128 SIPSFCCLGQSPVLALISD 184
SIP+F CL S L L+ +
Sbjct: 216 SIPAFTCLPLSDQLLLLEE 234
>AF219117-1|AAF71999.1| 406|Tribolium castaneum tailless ortholog
protein.
Length = 406
Score = 21.0 bits (42), Expect = 3.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 128 SIPSFCCLGQSPVLALISD 184
SIP+F CL S L L+ +
Sbjct: 216 SIPAFTCLPLSDQLLLLEE 234
>AM292374-1|CAL23186.2| 659|Tribolium castaneum gustatory receptor
candidate 53 protein.
Length = 659
Score = 20.6 bits (41), Expect = 5.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 281 ETVKMISVK*IPLNKRI 231
E VKM+ ++ + LNK+I
Sbjct: 459 ELVKMLKIRFVILNKQI 475
>AM292345-1|CAL23157.2| 384|Tribolium castaneum gustatory receptor
candidate 24 protein.
Length = 384
Score = 20.6 bits (41), Expect = 5.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 281 ETVKMISVK*IPLNKRI 231
E VKM+ ++ + LNK+I
Sbjct: 184 ELVKMLKIRFVILNKQI 200
>AY043292-1|AAK96031.1| 323|Tribolium castaneum homeodomain
transcription factor Prothoraxlessprotein.
Length = 323
Score = 20.2 bits (40), Expect = 6.7
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2
Query: 180 DIRARTGLCPKQQKDGIE 127
DIRA P+QQ DG E
Sbjct: 90 DIRAAGYYGPQQQMDGQE 107
>U09586-2|AAC47271.1| 712|Tribolium castaneum protease, reverse
transcriptase andRNase H protein.
Length = 712
Score = 19.8 bits (39), Expect = 8.8
Identities = 6/16 (37%), Positives = 11/16 (68%)
Frame = -1
Query: 340 KRTRHHEVFIILCNVH 293
++T+H F+ LCN +
Sbjct: 530 QKTKHVRAFLGLCNFY 545
>DQ138189-1|ABA03053.1| 162|Tribolium castaneum bursicon protein.
Length = 162
Score = 19.8 bits (39), Expect = 8.8
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +2
Query: 131 IPSFCCLGQ 157
IPSF C+G+
Sbjct: 60 IPSFACIGR 68
>AM292365-1|CAL23177.1| 313|Tribolium castaneum gustatory receptor
candidate 44 protein.
Length = 313
Score = 19.8 bits (39), Expect = 8.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -3
Query: 320 SFYYFVQCAF*FTETVKMIS 261
SFY+F+ F F T +I+
Sbjct: 238 SFYFFISTFFYFFTTGNIIA 257
>AM292325-1|CAL23137.2| 309|Tribolium castaneum gustatory receptor
candidate 4 protein.
Length = 309
Score = 19.8 bits (39), Expect = 8.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -3
Query: 320 SFYYFVQCAF*FTETVKMIS 261
SFY+F+ F F T +I+
Sbjct: 234 SFYFFISTFFYFFTTGNIIA 253
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,423
Number of Sequences: 336
Number of extensions: 1934
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used: 7299165
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
- SilkBase 1999-2023 -