Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13c19
(361 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612... 35 0.017
07_03_0831 - 21810002-21810319,21810423-21810573,21810660-218108... 31 0.27
07_01_0547 + 4052618-4052659,4055575-4055741,4055839-4056556,405... 29 1.1
04_03_0923 + 20843477-20845044,20846081-20846996 28 1.9
04_03_0772 - 19438910-19439209,19439692-19439828,19441334-194415... 28 1.9
06_01_0244 - 1844161-1844241,1844356-1844394,1844510-1844617,184... 28 2.5
04_03_0914 + 20788103-20789642,20790036-20790529 27 3.4
10_01_0264 - 2773835-2774201,2774595-2775330,2775430-2775496 27 4.4
01_02_0099 + 11092529-11093140,11094153-11094424,11095378-110954... 27 4.4
12_02_1036 - 25587313-25587890,25589209-25589272,25589356-255894... 27 5.9
12_02_0417 - 18896949-18897269,18897340-18897424,18899561-188996... 27 5.9
12_01_0329 + 2545511-2546683,2546983-2546993,2547377-2547438,254... 27 5.9
11_06_0277 + 21843658-21845220,21846533-21846718,21847037-218471... 27 5.9
04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163 27 5.9
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 27 5.9
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376... 26 7.7
04_04_0444 + 25270620-25273001 26 7.7
02_04_0335 + 22117902-22119869 26 7.7
01_05_0710 + 24492337-24493053 26 7.7
01_01_1029 - 8152182-8152589 26 7.7
01_01_0651 - 4970685-4971053,4971185-4971381,4971867-4972233 26 7.7
01_01_0270 - 2225250-2225263,2225549-2225732,2225817-2225972,222... 26 7.7
>03_05_0435 -
24259864-24260206,24260302-24260467,24261175-24261241,
24261553-24261648,24261718-24261898,24262252-24262323,
24262393-24262505,24262596-24262817,24263262-24263910,
24264118-24264206,24265932-24266015,24266219-24266358,
24266522-24266573
Length = 757
Score = 35.1 bits (77), Expect = 0.017
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -2
Query: 150 KQQKDGIECCYGVSVKETRCRKHGGECF-SKGYCSQS 43
K Q D ++ C S K+++C K ECF SK YCS+S
Sbjct: 452 KCQNDNVDSCKRCSCKKSKCLKLYCECFASKVYCSES 488
>07_03_0831 -
21810002-21810319,21810423-21810573,21810660-21810897,
21811011-21811221,21811336-21811559,21811696-21811806,
21813265-21813636,21813810-21814782
Length = 865
Score = 31.1 bits (67), Expect = 0.27
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 112 HSVTAFDSVFLLLRTESSSGSDIRWTVLSHSTQTTFPAARILL 240
H++T D L++ ++G+D+ W H T T P I L
Sbjct: 129 HTLTIRDDGNLVISGSDAAGTDVEWESFHHPTDTFVPGMEIAL 171
>07_01_0547 +
4052618-4052659,4055575-4055741,4055839-4056556,
4056678-4057114,4057241-4057315,4057490-4057673,
4057759-4057854,4057952-4058018,4058556-4058715,
4058808-4059199,4059254-4059300
Length = 794
Score = 29.1 bits (62), Expect = 1.1
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -2
Query: 138 DGIECCYGVSVKETRCRKHGGECFSKG-YCSQ 46
DG E C S K+++C K ECF+ G YCS+
Sbjct: 463 DG-EACKRCSCKKSKCLKLYCECFAAGVYCSE 493
>04_03_0923 + 20843477-20845044,20846081-20846996
Length = 827
Score = 28.3 bits (60), Expect = 1.9
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Frame = +1
Query: 115 SVTAFDSVFLLLRT------ESSSGSDIRWTVLSHSTQTTFPAARI 234
++TA D++ +LL SS+ S I W + T T FP+A+I
Sbjct: 123 NITAKDTIAILLNNGNLVLRSSSNSSIIFWQSFDYPTDTLFPSAKI 168
>04_03_0772 -
19438910-19439209,19439692-19439828,19441334-19441570,
19441948-19442149,19442761-19442858,19443082-19443665,
19443725-19443882
Length = 571
Score = 28.3 bits (60), Expect = 1.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 303 AMCILVYGNSEDDFCEIDSIEQEDPC 226
A C+ V G S DD CE ++ +D C
Sbjct: 83 AACLGVIGGSGDDLCEKAAVRYDDRC 108
>06_01_0244 -
1844161-1844241,1844356-1844394,1844510-1844617,
1844638-1844685,1845058-1845111,1845214-1845268,
1845442-1845522,1846238-1846615,1847196-1847401
Length = 349
Score = 27.9 bits (59), Expect = 2.5
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +2
Query: 128 SIPSFCCLGQSPVLALISDGQSSATVHKPPSLRHGS 235
++PS CCL SP S VHKPP R GS
Sbjct: 125 AVPSGCCLSSSP--------GSVIWVHKPPEGRRGS 152
>04_03_0914 + 20788103-20789642,20790036-20790529
Length = 677
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 145 LLRTESSSGSDIRWTVLSHSTQTTFPAARI 234
L+ T S+ S++ W + T T FP A++
Sbjct: 136 LILTNPSNSSEVLWQSFDYPTDTLFPRAKL 165
>10_01_0264 - 2773835-2774201,2774595-2775330,2775430-2775496
Length = 389
Score = 27.1 bits (57), Expect = 4.4
Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 4/76 (5%)
Frame = -2
Query: 249 SIEQEDPCRREGGLCTVAEDCPSDIRARTGLCPKQQKDGIE----CCYGVSVKETRCRKH 82
S+ C G + CP+++RA G + D CC G + CR
Sbjct: 165 SLTSAATCAAAGCAADLNAMCPAELRAGGGAACRSACDAFGRPEFCCSGAFANPSTCRPT 224
Query: 81 GGECFSKGYCSQSLIY 34
K C +S Y
Sbjct: 225 AYSQVFKSACPRSYSY 240
>01_02_0099 +
11092529-11093140,11094153-11094424,11095378-11095438,
11095553-11095622,11095645-11095901,11096466-11096639
Length = 481
Score = 27.1 bits (57), Expect = 4.4
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 249 SIEQEDPCRREGGLCTVAEDCPSD 178
S+E+ED C R GG VA DC D
Sbjct: 439 SMEKEDGCSRVGG--AVASDCVED 460
>12_02_1036 -
25587313-25587890,25589209-25589272,25589356-25589448,
25589533-25589683,25590474-25590539,25590594-25590907
Length = 421
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -2
Query: 156 CPKQQKDGIECCYGVSVKETRCRKHGGECFSKG-YCSQS 43
C ++ D E C S K+++C K CF+ G +CS+S
Sbjct: 103 CFWRKTDEGEGCKSCSCKKSKCLKLYCVCFASGSHCSES 141
>12_02_0417 -
18896949-18897269,18897340-18897424,18899561-18899656,
18900418-18900476,18901285-18901359
Length = 211
Score = 26.6 bits (56), Expect = 5.9
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 167 LALISDGQSSATVHKPPSLRHGSSCSMESISQKSSSLFP 283
LA I+D Q T+ +P + HG+S + +FP
Sbjct: 89 LAAIADTQPQTTISRPQMVPHGASPGLGGQYMSQVPMFP 127
>12_01_0329 +
2545511-2546683,2546983-2546993,2547377-2547438,
2547882-2548225
Length = 529
Score = 26.6 bits (56), Expect = 5.9
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = -2
Query: 258 EIDSIEQEDPCRREGGLCTVAEDCPSDIRARTGLCPKQQKDGIECCYGVSVKE 100
EI E P LC + C + AR DG++CCY V++ +
Sbjct: 444 EISLYENATPDASFSWLCHDDDLCAAHCNARR-THTSSHTDGVQCCYKVNMSD 495
>11_06_0277 +
21843658-21845220,21846533-21846718,21847037-21847165,
21847256-21847415,21847846-21847955,21848038-21848247,
21848473-21848730,21848810-21848885,21849217-21849350,
21849928-21850007,21850265-21850316
Length = 985
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 309 FCAMCILVYGN-SEDDFCEIDSIEQE 235
FC + +L G DD CE++SI+ E
Sbjct: 565 FCCLKLLASGKLGNDDLCEVNSIDVE 590
>04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163
Length = 723
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = -2
Query: 267 DFCEIDSIEQEDPCRREGG--LCTVAEDCPSDIRARTGLC 154
D C + D C+ GG CT C R R+GLC
Sbjct: 562 DNCSKSAQGSTDFCKAHGGGKRCTWGTGCEKFARGRSGLC 601
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 26.6 bits (56), Expect = 5.9
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -2
Query: 183 SDIRARTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSL-IYEEA-SDCPE 10
S +R+R+G ++D + S +K G E + KGY ++L +Y+ A + CP+
Sbjct: 173 SIVRSRSGGVVVAEEDAVVRRAMSSADPEELKKAGNEQYKKGYFEEALRLYDRALALCPD 232
>06_01_0520 +
3761990-3762327,3763304-3763589,3763746-3763820,
3764013-3764961,3766967-3767064,3768144-3768284,
3768758-3768874,3768924-3769013,3769014-3771818
Length = 1632
Score = 26.2 bits (55), Expect = 7.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -2
Query: 228 CRREGG--LCTVAE-DCPSDIRARTGLCPKQQKDG 133
C R+G LC E CP ++A G+C K+ K G
Sbjct: 553 CERKGSPILCVSVEFSCPCKLQACIGVCLKKVKVG 587
>04_04_0444 + 25270620-25273001
Length = 793
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 145 LLRTESSSGSDIRWTVLSHSTQTTFPAARI 234
L+ +++S+ S I W SH T T P A++
Sbjct: 143 LVLSDASNSSIIFWESFSHMTDTFLPGAKM 172
>02_04_0335 + 22117902-22119869
Length = 655
Score = 26.2 bits (55), Expect = 7.7
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = -2
Query: 267 DFCEIDSIEQEDPCRREGG--LCTVAEDCPSDIRARTGLC 154
D C + + C+ GG CT A C R R+GLC
Sbjct: 495 DGCAKSAQGSTEFCKAHGGGKRCTWATGCEKFARGRSGLC 534
>01_05_0710 + 24492337-24493053
Length = 238
Score = 26.2 bits (55), Expect = 7.7
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = -3
Query: 227 AAGKVVCVLWLRTVHLISEPELDSVLSSKKTESNAVTECP*KRPDVGSTAENVSR 63
AA + + V +RT + E D++L + E E K+PD G AE V +
Sbjct: 177 AALREMAVDGIRTSAKLRESVRDAMLQDARIEEAWALEAAMKQPDSGKLAELVQK 231
>01_01_1029 - 8152182-8152589
Length = 135
Score = 26.2 bits (55), Expect = 7.7
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -2
Query: 171 ARTGLCPKQQKDGIECCYGVSVKETRCRKHGGECF 67
A G C K G CC G V RK+ G+CF
Sbjct: 84 AHCGSCNHVCKYGETCCGGHCVDLLSDRKNCGDCF 118
>01_01_0651 - 4970685-4971053,4971185-4971381,4971867-4972233
Length = 310
Score = 26.2 bits (55), Expect = 7.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 167 LALISDGQSSATVHKPPSLRHGSSCSMESISQKSS 271
L + S Q A + PPSL SCS ++S SS
Sbjct: 222 LGISSMAQPEAMLLPPPSLTLTPSCSSPAVSSSSS 256
>01_01_0270 -
2225250-2225263,2225549-2225732,2225817-2225972,
2226276-2226374,2226489-2226563,2226682-2226750,
2226917-2227115,2227492-2227597,2228118-2228526
Length = 436
Score = 26.2 bits (55), Expect = 7.7
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 112 HSVTAFDSVFLLLRTESSSGSDI 180
HS+T D V L +TE SGSDI
Sbjct: 294 HSLTEGDFVSLAYQTEGFSGSDI 316
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,483,093
Number of Sequences: 37544
Number of extensions: 224700
Number of successful extensions: 729
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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