Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13c19
(361 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE013599-3231|AAF46736.1| 127|Drosophila melanogaster CG10433-P... 60 6e-10
AY094699-1|AAM11052.1| 98|Drosophila melanogaster GH10517p pro... 40 7e-04
AE013599-3232|AAM70922.1| 98|Drosophila melanogaster CG10433-P... 40 7e-04
BT009966-1|AAQ22435.1| 1091|Drosophila melanogaster RE68041p pro... 31 0.58
AF198084-1|AAF04860.1| 1081|Drosophila melanogaster semaphorin 5... 31 0.58
AE014296-2088|AAF49966.3| 1093|Drosophila melanogaster CG5661-PA... 31 0.58
AY118480-1|AAM49849.1| 81|Drosophila melanogaster GM20557p pro... 29 1.4
AE014134-2758|AAF53557.1| 118|Drosophila melanogaster CG17996-P... 29 1.4
AE014296-2187|AAN11857.1| 872|Drosophila melanogaster CG17666-P... 29 2.4
AY113210-1|AAM29215.1| 872|Drosophila melanogaster AT06220p pro... 28 4.1
BT021377-1|AAX33525.1| 540|Drosophila melanogaster LD43587p pro... 27 5.4
AF145613-1|AAD38588.1| 516|Drosophila melanogaster BcDNA.GH0310... 27 5.4
AE013599-3995|AAF47301.1| 540|Drosophila melanogaster CG2790-PA... 27 5.4
AL138972-3|CAB72286.1| 2447|Drosophila melanogaster EG:BACR25B3.... 27 7.2
AJ487018-1|CAD31650.1| 4223|Drosophila melanogaster perlecan pro... 27 7.2
AF492764-2|AAM11674.1| 849|Drosophila melanogaster pol protein ... 27 7.2
AE014298-409|AAN09080.1| 3215|Drosophila melanogaster CG33950-PB... 27 7.2
AE014298-408|AAN09079.1| 4223|Drosophila melanogaster CG33950-PD... 27 7.2
AE014298-407|AAF45786.3| 4179|Drosophila melanogaster CG33950-PA... 27 7.2
AE014298-406|AAN09078.1| 4228|Drosophila melanogaster CG33950-PE... 27 7.2
AE014298-405|AAN09077.1| 4117|Drosophila melanogaster CG33950-PC... 27 7.2
AE014298-404|AAF45787.2| 4629|Drosophila melanogaster CG33950-PF... 27 7.2
AY094717-1|AAM11070.1| 487|Drosophila melanogaster GH17724p pro... 27 9.5
AE014297-2520|AAF55555.1| 487|Drosophila melanogaster CG12333-P... 27 9.5
>AE013599-3231|AAF46736.1| 127|Drosophila melanogaster CG10433-PA,
isoform A protein.
Length = 127
Score = 60.5 bits (140), Expect = 6e-10
Identities = 28/74 (37%), Positives = 38/74 (51%)
Frame = -2
Query: 228 CRREGGLCTVAEDCPSDIRARTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCS 49
C GGLC DC + + GLCP +G+ECCY + V+ C +H G+C + C
Sbjct: 51 CVMVGGLCVAESDC-IEPTSNKGLCPTSAGEGVECCYELPVRPAPCAEHLGQCMDR--CH 107
Query: 48 QSLIYEEASDCPEG 7
Q L+ SDC G
Sbjct: 108 QRLL-RPGSDCKNG 120
>AY094699-1|AAM11052.1| 98|Drosophila melanogaster GH10517p
protein.
Length = 98
Score = 40.3 bits (90), Expect = 7e-04
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -2
Query: 228 CRREGGLCTVAEDCPSDIRARTGLCPKQQKDGIECCY 118
C GGLC DC + + GLCP +G+ECCY
Sbjct: 51 CVMVGGLCVAESDC-IEPTSNKGLCPTSAGEGVECCY 86
>AE013599-3232|AAM70922.1| 98|Drosophila melanogaster CG10433-PB,
isoform B protein.
Length = 98
Score = 40.3 bits (90), Expect = 7e-04
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -2
Query: 228 CRREGGLCTVAEDCPSDIRARTGLCPKQQKDGIECCY 118
C GGLC DC + + GLCP +G+ECCY
Sbjct: 51 CVMVGGLCVAESDC-IEPTSNKGLCPTSAGEGVECCY 86
>BT009966-1|AAQ22435.1| 1091|Drosophila melanogaster RE68041p
protein.
Length = 1091
Score = 30.7 bits (66), Expect = 0.58
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -2
Query: 210 LCTVAEDCPSDIRARTGLCPKQQ-KDGIECCYGVSVKETRCRKHGG--ECFSKGYCSQS 43
+C E S+ + R C Q + G C G+S + T C +HGG E + CSQ+
Sbjct: 562 VCQQHEQPDSNCQCRQRSCNNPQPQHGGATCEGISTQVTNCTQHGGWTEWSAWSPCSQT 620
>AF198084-1|AAF04860.1| 1081|Drosophila melanogaster semaphorin 5C
protein.
Length = 1081
Score = 30.7 bits (66), Expect = 0.58
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -2
Query: 210 LCTVAEDCPSDIRARTGLCPKQQ-KDGIECCYGVSVKETRCRKHGG--ECFSKGYCSQS 43
+C E S+ + R C Q + G C G+S + T C +HGG E + CSQ+
Sbjct: 552 VCQQHEQPDSNCQCRQRSCNNPQPQHGGATCEGISTQVTNCTQHGGWTEWSAWSPCSQT 610
>AE014296-2088|AAF49966.3| 1093|Drosophila melanogaster CG5661-PA
protein.
Length = 1093
Score = 30.7 bits (66), Expect = 0.58
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -2
Query: 210 LCTVAEDCPSDIRARTGLCPKQQ-KDGIECCYGVSVKETRCRKHGG--ECFSKGYCSQS 43
+C E S+ + R C Q + G C G+S + T C +HGG E + CSQ+
Sbjct: 564 VCQQHEQPDSNCQCRQRSCNNPQPQHGGATCEGISTQVTNCTQHGGWTEWSAWSPCSQT 622
>AY118480-1|AAM49849.1| 81|Drosophila melanogaster GM20557p
protein.
Length = 81
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = -2
Query: 174 RARTGLCPKQQKDGIECCYGVSV-KETRCRKHGG---ECFSKGYCSQS 43
RA+T C K+ D ECC S+ CRK EC ++ Y +++
Sbjct: 4 RAKTEFCSKEVADFQECCKASSILMVATCRKQNSALKECLTQWYQNEA 51
>AE014134-2758|AAF53557.1| 118|Drosophila melanogaster CG17996-PA
protein.
Length = 118
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = -2
Query: 174 RARTGLCPKQQKDGIECCYGVSV-KETRCRKHGG---ECFSKGYCSQS 43
RA+T C K+ D ECC S+ CRK EC ++ Y +++
Sbjct: 41 RAKTEFCSKEVADFQECCKASSILMVATCRKQNSALKECLTQWYQNEA 88
>AE014296-2187|AAN11857.1| 872|Drosophila melanogaster CG17666-PA,
isoform A protein.
Length = 872
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = -2
Query: 297 CILVYGNSEDDFCEIDSIEQ--EDPCRREGGLCTVAEDCPSDIRARTG 160
C N +D +D+ + E+PC+ C EDC D ARTG
Sbjct: 74 CSACGDNCKDPCLNMDACAESCENPCQDGKNGCKNPEDCAQDDLARTG 121
>AY113210-1|AAM29215.1| 872|Drosophila melanogaster AT06220p
protein.
Length = 872
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = -2
Query: 297 CILVYGNSEDDFCEIDSIEQ--EDPCRREGGLCTVAEDCPSDIRARTG 160
C N +D +D+ + E+PC+ C EDC D ARTG
Sbjct: 74 CSACGDNCKDPCLNMDACAESCENPCQDGVNGCKNPEDCGQDDLARTG 121
>BT021377-1|AAX33525.1| 540|Drosophila melanogaster LD43587p
protein.
Length = 540
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = -1
Query: 148 AAKRRN---RMLLRSVRKRDQMSEARRRMFLERL 56
A K RN R L+ VRKRD +A RRM ER+
Sbjct: 195 ARKERNEEVRNLVNFVRKRDPRVQAYRRMLEERV 228
>AF145613-1|AAD38588.1| 516|Drosophila melanogaster BcDNA.GH03108
protein.
Length = 516
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = -1
Query: 148 AAKRRN---RMLLRSVRKRDQMSEARRRMFLERL 56
A K RN R L+ VRKRD +A RRM ER+
Sbjct: 170 ARKERNEEVRNLVNFVRKRDPRVQAYRRMLEERV 203
>AE013599-3995|AAF47301.1| 540|Drosophila melanogaster CG2790-PA
protein.
Length = 540
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = -1
Query: 148 AAKRRN---RMLLRSVRKRDQMSEARRRMFLERL 56
A K RN R L+ VRKRD +A RRM ER+
Sbjct: 195 ARKERNEEVRNLVNFVRKRDPRVQAYRRMLEERV 228
>AL138972-3|CAB72286.1| 2447|Drosophila melanogaster EG:BACR25B3.1
protein.
Length = 2447
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = -2
Query: 153 PKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSLIYEEASDCPEGND 1
P Q + I G + CR H +C + SL E DC +G+D
Sbjct: 745 PTQNVNVIRPKLGPNPIPKSCRPHEWQCANLECIDSSLQCNEIKDCSDGSD 795
>AJ487018-1|CAD31650.1| 4223|Drosophila melanogaster perlecan
protein.
Length = 4223
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = -2
Query: 153 PKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSLIYEEASDCPEGND 1
P Q + I G + CR H +C + SL E DC +G+D
Sbjct: 736 PTQNVNVIRPKLGPNPIPKSCRPHEWQCANLECIDSSLQCNEIKDCSDGSD 786
>AF492764-2|AAM11674.1| 849|Drosophila melanogaster pol protein
protein.
Length = 849
Score = 27.1 bits (57), Expect = 7.2
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +3
Query: 180 QMDSPQPQYTNHLPCGTDPLVQWNLFHRNHLHCFRKLKCT 299
Q+DS PQ L T +Q NLF NHL+ K K T
Sbjct: 99 QVDSSFPQDPTFLETST---LQENLFRLNHLNAEEKYKLT 135
>AE014298-409|AAN09080.1| 3215|Drosophila melanogaster CG33950-PB,
isoform B protein.
Length = 3215
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = -2
Query: 153 PKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSLIYEEASDCPEGND 1
P Q + I G + CR H +C + SL E DC +G+D
Sbjct: 736 PTQNVNVIRPKLGPNPIPKSCRPHEWQCANLECIDSSLQCNEIKDCSDGSD 786
>AE014298-408|AAN09079.1| 4223|Drosophila melanogaster CG33950-PD,
isoform D protein.
Length = 4223
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = -2
Query: 153 PKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSLIYEEASDCPEGND 1
P Q + I G + CR H +C + SL E DC +G+D
Sbjct: 736 PTQNVNVIRPKLGPNPIPKSCRPHEWQCANLECIDSSLQCNEIKDCSDGSD 786
>AE014298-407|AAF45786.3| 4179|Drosophila melanogaster CG33950-PA,
isoform A protein.
Length = 4179
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = -2
Query: 153 PKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSLIYEEASDCPEGND 1
P Q + I G + CR H +C + SL E DC +G+D
Sbjct: 736 PTQNVNVIRPKLGPNPIPKSCRPHEWQCANLECIDSSLQCNEIKDCSDGSD 786
>AE014298-406|AAN09078.1| 4228|Drosophila melanogaster CG33950-PE,
isoform E protein.
Length = 4228
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = -2
Query: 153 PKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSLIYEEASDCPEGND 1
P Q + I G + CR H +C + SL E DC +G+D
Sbjct: 736 PTQNVNVIRPKLGPNPIPKSCRPHEWQCANLECIDSSLQCNEIKDCSDGSD 786
>AE014298-405|AAN09077.1| 4117|Drosophila melanogaster CG33950-PC,
isoform C protein.
Length = 4117
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = -2
Query: 153 PKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSLIYEEASDCPEGND 1
P Q + I G + CR H +C + SL E DC +G+D
Sbjct: 736 PTQNVNVIRPKLGPNPIPKSCRPHEWQCANLECIDSSLQCNEIKDCSDGSD 786
>AE014298-404|AAF45787.2| 4629|Drosophila melanogaster CG33950-PF,
isoform F protein.
Length = 4629
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = -2
Query: 153 PKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSLIYEEASDCPEGND 1
P Q + I G + CR H +C + SL E DC +G+D
Sbjct: 1142 PTQNVNVIRPKLGPNPIPKSCRPHEWQCANLECIDSSLQCNEIKDCSDGSD 1192
>AY094717-1|AAM11070.1| 487|Drosophila melanogaster GH17724p
protein.
Length = 487
Score = 26.6 bits (56), Expect = 9.5
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Frame = +1
Query: 40 QRLTAVAFRET------FSAVLPTSGLFYGHSVTAFDSVFLLLRTESSSGSDIR 183
QRL A R+T F +P +F GH+ T SVF + SGSD R
Sbjct: 332 QRLVVTASRDTTFRLWDFREAIPAVSVFQGHTETVTSSVF-ARDDKVVSGSDDR 384
>AE014297-2520|AAF55555.1| 487|Drosophila melanogaster CG12333-PA
protein.
Length = 487
Score = 26.6 bits (56), Expect = 9.5
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Frame = +1
Query: 40 QRLTAVAFRET------FSAVLPTSGLFYGHSVTAFDSVFLLLRTESSSGSDIR 183
QRL A R+T F +P +F GH+ T SVF + SGSD R
Sbjct: 332 QRLVVTASRDTTFRLWDFREAIPAVSVFQGHTETVTSSVF-ARDDKVVSGSDDR 384
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,450,833
Number of Sequences: 53049
Number of extensions: 389060
Number of successful extensions: 1339
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 901135692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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