Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13c19
(361 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021471-1|CAA16295.1| 241|Caenorhabditis elegans Hypothetical ... 33 0.045
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr... 33 0.079
AC006633-3|AAK68375.1| 227|Caenorhabditis elegans Hypothetical ... 31 0.24
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 31 0.32
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 31 0.32
AC024839-1|AAF60832.2| 232|Caenorhabditis elegans Thaumatin fam... 30 0.42
Z68159-3|CAD89733.1| 351|Caenorhabditis elegans Hypothetical pr... 29 0.98
Z68159-2|CAD89732.1| 354|Caenorhabditis elegans Hypothetical pr... 29 0.98
U41546-5|AAC48222.2| 1022|Caenorhabditis elegans Sodium:neurotra... 29 1.3
AF039043-7|AAY86190.1| 103|Caenorhabditis elegans Hypothetical ... 28 1.7
U41991-7|AAA83347.1| 255|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z30423-10|CAA83014.1| 216|Caenorhabditis elegans Hypothetical p... 27 3.9
U88173-9|AAK21384.3| 320|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z81547-3|CAB04461.1| 253|Caenorhabditis elegans Hypothetical pr... 27 5.2
U58751-9|AAB00660.1| 133|Caenorhabditis elegans Hypothetical pr... 27 5.2
AL110482-6|CAB60339.1| 179|Caenorhabditis elegans Hypothetical ... 27 5.2
Z82083-2|CAB04970.1| 263|Caenorhabditis elegans Hypothetical pr... 26 9.1
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr... 26 9.1
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr... 26 9.1
U97013-4|AAB52339.1| 968|Caenorhabditis elegans Alanyl trna syn... 26 9.1
AC024776-12|AAK68460.1| 263|Caenorhabditis elegans Delta/serrat... 26 9.1
>AL021471-1|CAA16295.1| 241|Caenorhabditis elegans Hypothetical
protein Y17D7C.1 protein.
Length = 241
Score = 33.5 bits (73), Expect = 0.045
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 357 GRVQN*SEHVIMKFLLFCAMCILVYGN 277
G V+ S+H+ FLLFC C +VYG+
Sbjct: 82 GLVETLSQHICRHFLLFCLQCRVVYGD 108
>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical protein
ZC84.1 protein.
Length = 1556
Score = 32.7 bits (71), Expect = 0.079
Identities = 24/82 (29%), Positives = 33/82 (40%)
Frame = -2
Query: 261 CEIDSIEQEDPCRREGGLCTVAEDCPSDIRARTGLCPKQQKDGIECCYGVSVKETRCRKH 82
CE E P + GG C C S+ GLC + K G E C V +C+++
Sbjct: 1196 CEDAKCECRPPLKAVGGFCQEEIQCSSNQVLHNGLCHNKAKLG-EACLTV----RQCQEN 1250
Query: 81 GGECFSKGYCSQSLIYEEASDC 16
G C + I E+A C
Sbjct: 1251 SGCIEGSCECKKGFI-EKAGKC 1271
>AC006633-3|AAK68375.1| 227|Caenorhabditis elegans Hypothetical
protein F35B3.4 protein.
Length = 227
Score = 31.1 bits (67), Expect = 0.24
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -2
Query: 189 CPSDIRARTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQ 46
CP A C Q +D +CCY SV T G +CF+ +C Q
Sbjct: 113 CPMQAAADIQYCAAQGQDHTDCCYRNSVGTTLA---GNKCFT--FCDQ 155
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
K07E12.1a protein.
Length = 13100
Score = 30.7 bits (66), Expect = 0.32
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -2
Query: 195 EDCPSDIRARTGLCPKQ--QKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSLIYEEAS 22
++CP ++A G CPK KDG CY + C + G+C S+G + Y A
Sbjct: 12962 DECPCKVKAHGGRCPKGYIAKDG--QCYDID----ECETNNGQC-SEGCVNTPGSYYCA- 13013
Query: 21 DCPEG 7
CP G
Sbjct: 13014 -CPHG 13017
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
Length = 13100
Score = 30.7 bits (66), Expect = 0.32
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -2
Query: 195 EDCPSDIRARTGLCPKQ--QKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSLIYEEAS 22
++CP ++A G CPK KDG CY + C + G+C S+G + Y A
Sbjct: 12962 DECPCKVKAHGGRCPKGYIAKDG--QCYDID----ECETNNGQC-SEGCVNTPGSYYCA- 13013
Query: 21 DCPEG 7
CP G
Sbjct: 13014 -CPHG 13017
>AC024839-1|AAF60832.2| 232|Caenorhabditis elegans Thaumatin family
protein 5 protein.
Length = 232
Score = 30.3 bits (65), Expect = 0.42
Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 10/88 (11%)
Frame = -2
Query: 255 IDSIEQEDPCRREGGLCTVAED-CPSDIRARTGLCPKQQKDGI-------ECCYGVSVKE 100
ID E CRR GG D CP D+ R K G ECC G
Sbjct: 130 IDPYGGEGDCRRAGGCFKNINDFCPGDLAVRKDGRTVGCKSGCVAYNNDQECCRGAFGTP 189
Query: 99 TRCRKHGGECFSKGYC--SQSLIYEEAS 22
+CR+ K C + S Y++A+
Sbjct: 190 DKCRQSRTAMLFKDACPTAYSYAYDDAT 217
>Z68159-3|CAD89733.1| 351|Caenorhabditis elegans Hypothetical
protein C33D9.3b protein.
Length = 351
Score = 29.1 bits (62), Expect = 0.98
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +2
Query: 158 SPVLALISDGQSSATVHKPPSLRHGSSCSMESISQKSSSLFP*TKMHIAQNNKNFMMTC 334
SP ++ SD S V P SS S +S S KSS L T++ ++ N+N C
Sbjct: 55 SPTVSPPSDTSSPPNVIGCPETTSFSSTSRKSKSSKSSPLASPTRLVASELNRNTYSDC 113
>Z68159-2|CAD89732.1| 354|Caenorhabditis elegans Hypothetical
protein C33D9.3a protein.
Length = 354
Score = 29.1 bits (62), Expect = 0.98
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = +2
Query: 158 SPVLALISDGQSSATVHKPPSLRHGSSCSMESISQKSSSLFP*TKMHIAQNNKNFMMTCS 337
SP ++ SD S V P SS S +S S KSS L T++ ++ N+N T S
Sbjct: 55 SPTVSPPSDTSSPPNVIGCPETTSFSSTSRKSKSSKSSPLASPTRLVASELNRNVSKTYS 114
>U41546-5|AAC48222.2| 1022|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 12
protein.
Length = 1022
Score = 28.7 bits (61), Expect = 1.3
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Frame = +1
Query: 55 VAFRETFSAVLPTSGLFYGHSVTAFDSVFLLLRTESSSGSDIRWTVLSHSTQTTF--PAA 228
V RE + + LFY V D LL SS G + +W + T ++ P +
Sbjct: 43 VKLRELVGSSANDAALFYLECVCHADETERLLNRGSSVGKEKKWKKVKRKTSSSVAPPLS 102
Query: 229 R-ILLFNGIYFTEIIFTVSVN 288
R I G+ ++I T+ V+
Sbjct: 103 RTISSLPGVSSPDVIQTIDVS 123
>AF039043-7|AAY86190.1| 103|Caenorhabditis elegans Hypothetical
protein F39C12.4 protein.
Length = 103
Score = 28.3 bits (60), Expect = 1.7
Identities = 22/70 (31%), Positives = 27/70 (38%)
Frame = -2
Query: 261 CEIDSIEQEDPCRREGGLCTVAEDCPSDIRARTGLCPKQQKDGIECCYGVSVKETRCRKH 82
C IE E C EG CT E S + + +CP+ + C G H
Sbjct: 36 CSSCGIENEGVCISEGRCCTNEECFMSTECSYSAVCPE-----LFCKIG---------HH 81
Query: 81 GGECFSKGYC 52
G C KGYC
Sbjct: 82 PGYCMKKGYC 91
>U41991-7|AAA83347.1| 255|Caenorhabditis elegans Hypothetical
protein C42D4.3 protein.
Length = 255
Score = 27.9 bits (59), Expect = 2.3
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -2
Query: 195 EDCPSDIRARTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQ 46
+ CP A C Q KD CC +V T G +CF+ +C Q
Sbjct: 118 DSCPMQAAADIQFCAAQGKDHTACCARNAVGTTLA---GNKCFT--FCDQ 162
>Z30423-10|CAA83014.1| 216|Caenorhabditis elegans Hypothetical
protein T20G5.12 protein.
Length = 216
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = -2
Query: 198 AEDCPSDIRARTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQS 43
+ +CP + C Q KD +CC V T G +C + +C Q+
Sbjct: 120 SSECPIEFLPEMQFCAAQGKDHSQCCSQSQVDATTA---GSKCLT--FCDQT 166
>U88173-9|AAK21384.3| 320|Caenorhabditis elegans Hypothetical
protein F46F11.7 protein.
Length = 320
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/45 (24%), Positives = 19/45 (42%)
Frame = -2
Query: 219 EGGLCTVAEDCPSDIRARTGLCPKQQKDGIECCYGVSVKETRCRK 85
EG ++ DC + G C + G+ C G ++ +C K
Sbjct: 86 EGSARSIVSDCGKHGKCVNGQCILNRCQGVSCDEGSMCRDGKCEK 130
>Z81547-3|CAB04461.1| 253|Caenorhabditis elegans Hypothetical
protein F53F8.4 protein.
Length = 253
Score = 26.6 bits (56), Expect = 5.2
Identities = 16/52 (30%), Positives = 21/52 (40%)
Frame = -2
Query: 195 EDCPSDIRARTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSL 40
+ CP D C Q +D +CC V T G +C S +C Q L
Sbjct: 172 DPCPLDAMKEMQFCAAQGRDHRDCCARNGVTTTLA---GPKCLS--FCDQRL 218
>U58751-9|AAB00660.1| 133|Caenorhabditis elegans Hypothetical
protein C07G1.6 protein.
Length = 133
Score = 26.6 bits (56), Expect = 5.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 200 TVHKPPSLRHGSSCSMESISQKSSSLFP*TKMHIAQNNKNFMM 328
T H PP +R S+ + S S +SS P K H + N ++
Sbjct: 48 TAHTPPLIRASSTSASASASTSTSSSRP--KKHYLEKNMEHLL 88
>AL110482-6|CAB60339.1| 179|Caenorhabditis elegans Hypothetical
protein Y39G8B.7 protein.
Length = 179
Score = 26.6 bits (56), Expect = 5.2
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Frame = -2
Query: 156 CPKQQKDGI--ECCYGVSVKETRCRKHGGECFSKGYCSQSLIYEE 28
C K G CCY +E C K G C S G C + +E+
Sbjct: 124 CASWAKRGFCTNCCYSCQDRERYCAKTCGFC-SAGTCKECNSFEK 167
>Z82083-2|CAB04970.1| 263|Caenorhabditis elegans Hypothetical
protein ZK1010.4 protein.
Length = 263
Score = 25.8 bits (54), Expect = 9.1
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = -2
Query: 213 GLCTVAEDCPSDIRARTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQ 46
G+ + CP + A C Q +D +CC V T G +C + +C Q
Sbjct: 169 GMYFKTDGCPLEAAADMHFCAAQGRDHTQCCVRNGVTTTLA---GQKCLT--FCDQ 219
>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical
protein ZC116.3 protein.
Length = 3871
Score = 25.8 bits (54), Expect = 9.1
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Frame = -2
Query: 264 FCEIDSIEQEDPCRREGGLCTVAE-----DCPSDIRARTGLCPKQQK 139
FCE S Q +PC+ GG C E DCP R C ++++
Sbjct: 378 FCEKTSPCQTNPCK-NGGTCIAVENSAYCDCPEHFFGRA--CEEEEE 421
>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical
protein ZC116.3 protein.
Length = 3871
Score = 25.8 bits (54), Expect = 9.1
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Frame = -2
Query: 264 FCEIDSIEQEDPCRREGGLCTVAE-----DCPSDIRARTGLCPKQQK 139
FCE S Q +PC+ GG C E DCP R C ++++
Sbjct: 378 FCEKTSPCQTNPCK-NGGTCIAVENSAYCDCPEHFFGRA--CEEEEE 421
>U97013-4|AAB52339.1| 968|Caenorhabditis elegans Alanyl trna
synthetase protein 2 protein.
Length = 968
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -2
Query: 183 SDIRARTGLCPKQQKDGIECCYGVSVKETR 94
S +RA TG + KDG++ Y V R
Sbjct: 274 SGVRAYTGFIGDEDKDGVDMAYRVVADHVR 303
>AC024776-12|AAK68460.1| 263|Caenorhabditis elegans
Delta/serrate/lag-2 domain protein3 protein.
Length = 263
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 156 CPKQQKDGIECCYGVSVKETRCRKHGGECFS 64
CP Q K G++C +S K +C+ +G C S
Sbjct: 154 CP-QGKRGLDCALPISKKWCKCQNNGA-CIS 182
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,052,759
Number of Sequences: 27780
Number of extensions: 198617
Number of successful extensions: 611
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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