Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13c16
(687 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 30 0.27
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 27 3.4
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 26 4.4
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 7.8
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 7.8
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 7.8
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 7.8
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 7.8
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 7.8
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 7.8
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 7.8
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 30.3 bits (65), Expect = 0.27
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = -2
Query: 323 LGNVNILRYLSLAYPTII-PYDHNDHIVDNLLDICHVLER-TSEKNKEAVVNRLFAHYK 153
+G + IL L ++ P ++ Y+H+D I +L CH L S+ N +A++ L + K
Sbjct: 1745 VGYLRILSCLLVSLPAMVYTYEHSDPITFDLSVFCHKLATLASQFNDDALIELLDTYLK 1803
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1
Query: 525 EYHFEKIQFTNTYNLSCPF 469
EY + FTN YN SC +
Sbjct: 215 EYRYVDFNFTNVYNTSCEY 233
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 26.2 bits (55), Expect = 4.4
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = -2
Query: 395 VNLRLIFKAAADSELKLSALSTPILGNVNILRYLSL-----AYPTIIPYDHNDHIVDNLL 231
V L+ +A E A+ P++ N+L + AYPT YD IVD+L
Sbjct: 341 VGLKNCIRAKISYENPNKAMRDPVIYRCNLLPHHRTGTKYRAYPT---YDFACPIVDSLE 397
Query: 230 DICHVLERTSEKNK 189
+ H L T +++
Sbjct: 398 GVTHALRTTEYRDR 411
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = -2
Query: 551 SPDSLPWYLNIILKKSNLPIHTTCH-----VHSSVPSEKLAKIKAFTQKLKTS 408
+P +++N IL ++ H C+ +HS SE + +K QKLK +
Sbjct: 541 APAHFQYFINTILGEAK-ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNA 592
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = -2
Query: 551 SPDSLPWYLNIILKKSNLPIHTTCH-----VHSSVPSEKLAKIKAFTQKLKTS 408
+P +++N IL ++ H C+ +HS SE + +K QKLK +
Sbjct: 541 APAHFQYFINTILGEAK-ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNA 592
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = -2
Query: 551 SPDSLPWYLNIILKKSNLPIHTTCH-----VHSSVPSEKLAKIKAFTQKLKTS 408
+P +++N IL ++ H C+ +HS SE + +K QKLK +
Sbjct: 541 APAHFQYFINTILGEAK-ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNA 592
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = -2
Query: 551 SPDSLPWYLNIILKKSNLPIHTTCH-----VHSSVPSEKLAKIKAFTQKLKTS 408
+P +++N IL ++ H C+ +HS SE + +K QKLK +
Sbjct: 541 APAHFQYFINTILGEAK-ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNA 592
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = -2
Query: 551 SPDSLPWYLNIILKKSNLPIHTTCH-----VHSSVPSEKLAKIKAFTQKLKTS 408
+P +++N IL ++ H C+ +HS SE + +K QKLK +
Sbjct: 541 APAHFQYFINTILGEAK-ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNA 592
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = -2
Query: 551 SPDSLPWYLNIILKKSNLPIHTTCH-----VHSSVPSEKLAKIKAFTQKLKTS 408
+P +++N IL ++ H C+ +HS SE + +K QKLK +
Sbjct: 541 APAHFQYFINTILGEAK-ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNA 592
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = -2
Query: 551 SPDSLPWYLNIILKKSNLPIHTTCH-----VHSSVPSEKLAKIKAFTQKLKTS 408
+P +++N IL ++ H C+ +HS SE + +K QKLK +
Sbjct: 541 APAHFQYFINTILGEAK-ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNA 592
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = -2
Query: 551 SPDSLPWYLNIILKKSNLPIHTTCH-----VHSSVPSEKLAKIKAFTQKLKTS 408
+P +++N IL ++ H C+ +HS SE + +K QKLK +
Sbjct: 541 APAHFQYFINTILGEAK-ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNA 592
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,706
Number of Sequences: 5004
Number of extensions: 54516
Number of successful extensions: 175
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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