Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13c16
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    26   0.29 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    26   0.29 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.51 
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               24   1.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.6  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   6.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.3  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = -2

Query: 530 YLNIILKKSNLPIHTTCHVHS--SVPSEKLAKIKAFTQKLKTSENPKVNLRLIFKA-AAD 360
           Y+  +++K +L IH TC VH+   +P        A    L T  +   +L  IF A A +
Sbjct: 314 YITPLIQK-HLKIHDTCGVHNLHGMPGILGGIFGALMAALATEASYDYSLYEIFPARAPN 372

Query: 359 SELKLSAL 336
           SE KL+ +
Sbjct: 373 SETKLAEM 380


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 9/42 (21%)
 Frame = +1

Query: 34  NFSHLSNHTLETNL---GVFLHCL------IKLYAAKSTTEN 132
           N SH  NH+ + NL   GV+++CL      + L+A K   +N
Sbjct: 573 NISHFINHSCDPNLAVYGVWINCLDPNLPKLALFATKDIKQN 614


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +2

Query: 2   IHIKTVRVKNIIFHIYQTTL*RQT*VYFSTA*LSCMLPS 118
           +H + V V+ ++   Y T + ++  +  ++A L C++PS
Sbjct: 90  VHSRDVNVRAVVAQYYDTDVNKEYAIRGNSAILKCVVPS 128


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 237 SIRHLPRFGEDIRKK*RSSCK 175
           ++RHLPR  +D  KK  + CK
Sbjct: 80  ALRHLPRSMQDSTKKLFNKCK 100


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 260 HNDHIVDNLLDICHVLERTSEKNKEAVV 177
           H   ++++LLD  +VLER      E +V
Sbjct: 23  HEKRLLNDLLDTYNVLERPVGNESEPLV 50


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 46  NVKNYVLNSHCFN 8
           NVK  + N+HC N
Sbjct: 404 NVKELIRNTHCVN 416


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = -2

Query: 317 NVNILRYLSLAYPTIIPYDHNDHIVDNLLDICHVLERTSEKNKEAVVNRLFAHYKTWI 144
           N NI + +  A  TII Y +ND  ++         E+ + +N++  +NR++  Y  +I
Sbjct: 414 NQNIAQNIDHAKNTIIDYRNNDLSINE--------EKRTIENEQ--LNRMYKSYPNYI 461


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,510
Number of Sequences: 438
Number of extensions: 3392
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)