Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13c10
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr ...   173   2e-44
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    28   1.0  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    26   5.3  
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    25   9.3  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    25   9.3  
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        25   9.3  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.3  

>SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score =  173 bits (421), Expect = 2e-44
 Identities = 92/192 (47%), Positives = 128/192 (66%), Gaps = 5/192 (2%)
 Frame = -2

Query: 644 FLPGTKVLEPG-QTLDFPNIGAAHCSPLAKMLFRIDGVKAVFFGPEFITVTKQDDDVDWK 468
           FLPG  +L P   + +F        SPLA+ LF IDGV ++FFG +FITV+K     +W 
Sbjct: 58  FLPGLDILPPTIGSCEFMRGQGTVNSPLAQKLFDIDGVDSIFFGKDFITVSK-GAGTEWA 116

Query: 467 LLKPEIFGTIMDFFASGLPVVTDA--KPSGDTQINEDDDEIVQMIKELLDTRIRPTVQED 294
            +KPE+F  IM+  ++G PV+++   K + DTQI E D +IV MIKEL++T IRP++QED
Sbjct: 117 QMKPEVFSVIMEHLSNGSPVLSEEPLKGASDTQILESDSQIVAMIKELIETSIRPSIQED 176

Query: 293 GGDVLFVDF--KDGILRLKMQGSCSSCPSSIVTLKNGVQNMMQFYIPEVLAVEQIDDEGE 120
           GGDV F  F  K G + LK++G+C +C SS VTLKNG+Q M++ YIPEV  V Q+ D  E
Sbjct: 177 GGDVEFRGFDEKTGTVSLKLRGACRTCSSSAVTLKNGIQQMLKHYIPEVENVVQVLDPEE 236

Query: 119 KLSEKIFREFEQ 84
           +++   F +FEQ
Sbjct: 237 EVAIAEFEKFEQ 248


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -2

Query: 248 LKMQG-SCSSCPSSIVTLKNGVQNMMQFYIPEVL 150
           L +QG +C+SC +SI ++  GV+ + QF I  +L
Sbjct: 6   LSVQGMTCTSCVASIQSMLEGVEGIEQFTISLLL 39


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 230 CSSCPSSIVTLKNGVQNMMQFY 165
           C S PSS VTL NG  +    Y
Sbjct: 313 CPSTPSSAVTLSNGFDSQSNAY 334


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 440 IMDFFASGLPVVTDAKPSGDTQINEDDDEIVQMIK 336
           ++    SG  VV D K +     +ED DE+  + K
Sbjct: 362 VLSISLSGKKVVVDQKEASSESSDEDQDELDNLTK 396


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 161 PEVLAVEQIDDEGEKLSEKI 102
           P+++ VEQ++DE E+  E I
Sbjct: 416 PKIVIVEQVEDENEEEEEAI 435


>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 143 EQIDDEGEKLSEKIFREFEQSKAKDANKDT 54
           E++DD  E + EK   E  +SKA   + +T
Sbjct: 356 EEVDDAKESIQEKEIDETTESKATHDSSET 385


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 530 AVFFGPEFITVTKQDDDVDWKLLKPEIFGTI 438
           AVF  P+ ++V K  +D    LLK ++ G++
Sbjct: 470 AVFKSPDIVSVKKTLEDARSHLLKDDLDGSV 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,548,434
Number of Sequences: 5004
Number of extensions: 50255
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)