Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13c10
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.47 
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    25   0.83 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       25   0.83 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    25   0.83 
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    24   1.1  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +3

Query: 252 QDSIFK---INKQYIATIFLYSRTNPCVQQFFYHLNYFIIIFIYLSIT 386
           +DS F    I+  ++ T+  YS       +   H NY  +IFI+ S T
Sbjct: 131 RDSAFSDKNIHVSFLRTVPPYSHQTDVWVELLKHFNYMKVIFIHSSDT 178


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 261 IFKINKQYIATIFLYSRTNPCVQQFFYHLNY 353
           I  ++  YI+ I  Y+  N   ++ +Y++NY
Sbjct: 82  ISSLSNNYISNISNYNNNNNYNKKLYYNINY 112


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 252 QDSIFKINKQYIATIFLYSRTNPCVQQFFY 341
           ++S +KI+++    +FL++ TN C+    Y
Sbjct: 287 RNSAYKIDQRIQKGLFLFACTNSCMNPIVY 316


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 261 IFKINKQYIATIFLYSRTNPCVQQFFYHLNY 353
           I  ++  YI+ I  Y+  N   ++ +Y++NY
Sbjct: 320 ISSLSNNYISNISNYNNNNNYNKKLYYNINY 350


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 261 IFKINKQYIATIFLYSRTNPCVQQFFYHLNY 353
           I  ++  YI+ I  Y+  N   ++ +Y++NY
Sbjct: 82  ISSLSNNYISNISNYNNDNNYNKKLYYNINY 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,564
Number of Sequences: 438
Number of extensions: 3317
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)