Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13c06
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021497-2|CAA16400.1|  606|Caenorhabditis elegans Hypothetical ...    40   0.002
Z54235-1|CAA90971.1|  416|Caenorhabditis elegans Hypothetical pr...    33   0.16 
Z46381-4|CAA86519.2|  604|Caenorhabditis elegans Hypothetical pr...    32   0.37 
AF040646-6|AAK31540.1|  510|Caenorhabditis elegans Hypothetical ...    31   0.64 
AF040646-5|AAK31539.1|  492|Caenorhabditis elegans Hypothetical ...    31   0.64 
AL021497-3|CAA16405.1|  613|Caenorhabditis elegans Hypothetical ...    29   3.4  
U29379-7|ABC71826.1|  710|Caenorhabditis elegans Patterned expre...    28   5.9  
U29379-6|AAF99981.3|  677|Caenorhabditis elegans Patterned expre...    28   5.9  
U29379-5|ABC71825.1|  777|Caenorhabditis elegans Patterned expre...    28   5.9  
Z66522-7|CAA91409.2|  472|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z66520-13|CAA91392.2|  472|Caenorhabditis elegans Hypothetical p...    28   7.9  
AL023830-1|CAA19472.1|  449|Caenorhabditis elegans Hypothetical ...    28   7.9  

>AL021497-2|CAA16400.1|  606|Caenorhabditis elegans Hypothetical
           protein Y51A2D.4 protein.
          Length = 606

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 14/45 (31%), Positives = 29/45 (64%)
 Frame = -2

Query: 278 LFFKPVANVVGLYAAFYFFGGVCLLTALYVVLVVPETKKRRIDEI 144
           L +  +  V+G Y AF+ + G+ ++  ++++ +VPETK   I+E+
Sbjct: 519 LTYLSLTQVIGKYGAFWLYAGLTVIAFIFILFLVPETKGYSIEEV 563


>Z54235-1|CAA90971.1|  416|Caenorhabditis elegans Hypothetical
           protein C09G9.1 protein.
          Length = 416

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +1

Query: 619 SPAASQKMQRQSASTGSEAGELRAPPATQEPRGP 720
           SPA S   +RQ+AS  S A E+  PPA+  P  P
Sbjct: 170 SPARSVLSRRQTASRSSHAAEVTPPPASYAPETP 203


>Z46381-4|CAA86519.2|  604|Caenorhabditis elegans Hypothetical
           protein M01F1.5 protein.
          Length = 604

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 278 LFFKPVANVVGLYAAFYFFGGVCLLTALYVVLVVPETKKRRIDEI 144
           L F  ++     Y  F+ + G  ++  ++V   VPETK   IDE+
Sbjct: 523 LTFLSLSQAATKYGTFFIYCGCTMVALVFVFFFVPETKGYSIDEV 567


>AF040646-6|AAK31540.1|  510|Caenorhabditis elegans Hypothetical
           protein H17B01.1b protein.
          Length = 510

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -2

Query: 278 LFFKPVANVVGLYAAFYFFGGVCLLTALYVVLVVPETKKRRIDEI 144
           L F P+ N++  Y+ F+ F G       Y    VPETK + I++I
Sbjct: 459 LTFLPINNLMQQYS-FFIFSGFLAFFIFYTWKFVPETKGKSIEQI 502


>AF040646-5|AAK31539.1|  492|Caenorhabditis elegans Hypothetical
           protein H17B01.1a protein.
          Length = 492

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -2

Query: 278 LFFKPVANVVGLYAAFYFFGGVCLLTALYVVLVVPETKKRRIDEI 144
           L F P+ N++  Y+ F+ F G       Y    VPETK + I++I
Sbjct: 441 LTFLPINNLMQQYS-FFIFSGFLAFFIFYTWKFVPETKGKSIEQI 484


>AL021497-3|CAA16405.1|  613|Caenorhabditis elegans Hypothetical
           protein Y51A2D.5 protein.
          Length = 613

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = -2

Query: 278 LFFKPVANVVGLYAAFYFFGGVCLLTALYVVLVVPETKKRRIDEI 144
           L +  + + +  Y AF+ +    ++  +++  +VPET    IDE+
Sbjct: 527 LTYLSLTHAITKYGAFWLYAIFTIIAFIFIYFLVPETTGYSIDEV 571


>U29379-7|ABC71826.1|  710|Caenorhabditis elegans Patterned
           expression site protein22, isoform c protein.
          Length = 710

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 263 VANVVGLYAAFYFFGGVCLLTALYVVLVVPETKKRRID 150
           V ++ G Y   ++FGG+ LL A  +   +P   K+  D
Sbjct: 660 VYDITGSYDTAFYFGGLVLLVAGLISATIPFVTKKDAD 697


>U29379-6|AAF99981.3|  677|Caenorhabditis elegans Patterned
           expression site protein22, isoform a protein.
          Length = 677

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 263 VANVVGLYAAFYFFGGVCLLTALYVVLVVPETKKRRID 150
           V ++ G Y   ++FGG+ LL A  +   +P   K+  D
Sbjct: 605 VYDITGSYDTAFYFGGLVLLVAGLISATIPFVTKKDAD 642


>U29379-5|ABC71825.1|  777|Caenorhabditis elegans Patterned
           expression site protein22, isoform b protein.
          Length = 777

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 263 VANVVGLYAAFYFFGGVCLLTALYVVLVVPETKKRRID 150
           V ++ G Y   ++FGG+ LL A  +   +P   K+  D
Sbjct: 660 VYDITGSYDTAFYFGGLVLLVAGLISATIPFVTKKDAD 697


>Z66522-7|CAA91409.2|  472|Caenorhabditis elegans Hypothetical
           protein F14E5.1 protein.
          Length = 472

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 266 PVANVVGLYAAFYFFGGVCLLTALYVVLVVPETKKRRIDEI 144
           P+ +V+G YA    +     ++ L +   +PETK R I +I
Sbjct: 425 PLYSVIGSYAFLILYSIPSFISMLILFRYLPETKGREIHDI 465


>Z66520-13|CAA91392.2|  472|Caenorhabditis elegans Hypothetical
           protein F14E5.1 protein.
          Length = 472

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 266 PVANVVGLYAAFYFFGGVCLLTALYVVLVVPETKKRRIDEI 144
           P+ +V+G YA    +     ++ L +   +PETK R I +I
Sbjct: 425 PLYSVIGSYAFLILYSIPSFISMLILFRYLPETKGREIHDI 465


>AL023830-1|CAA19472.1|  449|Caenorhabditis elegans Hypothetical
           protein Y26E6A.1 protein.
          Length = 449

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/27 (55%), Positives = 15/27 (55%)
 Frame = -1

Query: 297 RRLPADAVLQAGRERGGTLCGFLLLRR 217
           RRL AD   QA RERGG   G   L R
Sbjct: 50  RRLQADRGAQAARERGGPAAGRAQLGR 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,017,240
Number of Sequences: 27780
Number of extensions: 235369
Number of successful extensions: 829
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)