Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13c06
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               21   9.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.0  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   9.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.0  

>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -2

Query: 254 VVGLYAAFYFFGGVCLLTALYVVLVVP 174
           ++ +    Y F  V L+T+ +V  V+P
Sbjct: 1   MISMLRCIYLFLSVILITSYFVTPVMP 27


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 413 PTHRSDAAPHQRSESVIILDTQG 345
           P H  D+   Q ++++ I +TQG
Sbjct: 163 PQHHLDSRVIQEAQNIAIQNTQG 185


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 325 ITVPRYIPCVSSIITLSER 381
           +TVPRY    SS+  +SE+
Sbjct: 82  VTVPRYKGVPSSLNVISEK 100


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 449 LRSHLTAHPHASPTHRSDAAPHQRSESVI 363
           L  HLT+ P  SP+ ++ A+   ++ S++
Sbjct: 671 LHLHLTSPPARSPSSQAQASQCPQTASLL 699


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,984
Number of Sequences: 438
Number of extensions: 2618
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)