Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13b23
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...    27   1.9  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    25   7.8  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   7.8  

>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 329 SSFNKFSFLLIKNKNEISHSLQSLVRTEKI 418
           S F KFSF L +N +   +S +SL+R E +
Sbjct: 8   SKFIKFSFQLFRNYSVCLNSSKSLIRVEGV 37


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 369 LFFINKKENLLKLDQISCFEL 307
           LFFIN K +LLK+D +   E+
Sbjct: 29  LFFINYKTDLLKVDDVYNHEI 49


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 269  NVSSLTRTQPQIMSSKQEIWSSFNKFSFLLIKNKNEISHSL-QSLVRTEKIYQK 427
            N+ S + T   I+   QE+ S   K +  L +   EIS  L QS+   EK+ +K
Sbjct: 1109 NIYSTSSTTLSILKDVQELKSLHTKEANQLSERIKEISEMLEQSIATEEKLRRK 1162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,461,578
Number of Sequences: 5004
Number of extensions: 46274
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)