Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13b23
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0097 + 20062385-20062745,20063374-20063613,20063831-200641...    29   2.6  
04_04_0010 - 22137258-22137428,22137734-22137794,22137917-221379...    29   3.5  
03_05_0915 + 28755584-28756139,28756695-28756846,28756994-287569...    28   6.0  

>11_06_0097 +
           20062385-20062745,20063374-20063613,20063831-20064102,
           20064304-20064315
          Length = 294

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 465 YLCFMLVIL*I*GFWYIFSVLTKDCNEWDISFLFFINK 352
           YLCF LVI  + G W +FS L      W I++    +K
Sbjct: 255 YLCFGLVIGFVLGLWVVFSTLLFK-KSWRIAYFRLFDK 291


>04_04_0010 -
           22137258-22137428,22137734-22137794,22137917-22137984,
           22138524-22138733,22138867-22138907,22139011-22139060,
           22139260-22139348,22139468-22139542,22139791-22139882,
           22140131-22140182,22140515-22140631,22141267-22141496,
           22141618-22141672,22141781-22141900
          Length = 476

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -2

Query: 647 LXYRLHRIQLCLVIKLQCTYS 585
           L YR+ RI +C+V+++ C+YS
Sbjct: 390 LPYRVSRIVICVVVQVLCSYS 410


>03_05_0915 +
           28755584-28756139,28756695-28756846,28756994-28756996,
           28757587-28757690,28758033-28758121,28758682-28758825,
           28759194-28759291,28759380-28759502,28760045-28760113,
           28760206-28760406
          Length = 512

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 167 HNNAFLAI*VKNTFVEKS*N*KNDANKRDIGVLYLYSLI 51
           HNNA LA+ V N F E   N     +K ++  L  Y +I
Sbjct: 314 HNNALLALLVSNNFAEIKSNVFKRVSKENLHNLVYYDII 352


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,272,925
Number of Sequences: 37544
Number of extensions: 210546
Number of successful extensions: 302
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)