Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13b21
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 189 4e-49
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 54 2e-08
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 54 2e-08
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 5.6
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 5.6
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 7.4
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 7.4
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 25 7.4
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 7.4
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc... 25 9.7
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 9.7
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo... 25 9.7
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 189 bits (460), Expect = 4e-49
Identities = 96/199 (48%), Positives = 124/199 (62%), Gaps = 1/199 (0%)
Frame = -2
Query: 663 GQGIQPTRDLSRFCKMAPSIFRIXRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 484
GQ IQP RDLSRF K P R+ R++ +L RLKVPP I QF +TLDK TA +FK+L
Sbjct: 37 GQDIQPKRDLSRFVKW-PEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLN 95
Query: 483 KYRPETXXXXXXXXXXXXXXXXXXXXXXXXKR-PNTIRSGTNTVTKLVEKKKAQLVVIAH 307
KYRPET + P ++ G N V L+E KKA+LV+IA
Sbjct: 96 KYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALIEAKKAKLVLIAS 155
Query: 306 DVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVV 127
DVDPIELV+FLPALC+KMGVPY IVK K+RLG ++H+KT LA+T V D+ + +V
Sbjct: 156 DVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVTEVREEDKNELASIV 215
Query: 126 EAIKTNFNERYEELRKXLG 70
A+ NF+ +Y+E R+ G
Sbjct: 216 SAVDANFSAKYDESRRKWG 234
Score = 31.5 bits (68), Expect = 0.11
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 74 WGGGVLGNKSNARIAKLEKAKA 9
WGGG++G K+ A +AK KA A
Sbjct: 233 WGGGIMGGKTQALLAKRAKAAA 254
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 54.0 bits (124), Expect = 2e-08
Identities = 23/56 (41%), Positives = 34/56 (60%)
Frame = -2
Query: 378 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 211
+R G N TK + + ++ +V+A D +PIE++L LP LC VPY V K+ LG
Sbjct: 32 LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 54.0 bits (124), Expect = 2e-08
Identities = 33/100 (33%), Positives = 47/100 (47%)
Frame = -2
Query: 378 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 199
I G V K V K + LV++A D+ P++++ +P LC VPY K LG +
Sbjct: 54 ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASN 113
Query: 198 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRK 79
K T + V G + SKV E + E YEE+ K
Sbjct: 114 TKRPTSCVMI-VPGGKKKDMSKVEE-----YKESYEEIIK 147
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 585 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 484
KAVL LK P IN F + L + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 5.6
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3
Query: 357 LCLCRIGWC 383
LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 601 PHPXPEGCTSASSESAPSDQPIYPDTGQDY 512
PHP SA S ++P P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 7.4
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +1
Query: 403 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 573
L F L +S Q FP FS L+NL + ++ Q L + R +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +3
Query: 153 HQTPHLLELSMCMSCGVQVHRGGTCP*QCSMV-HPFYGIT 269
H HL +S C+ ++H G P + HP YG T
Sbjct: 803 HMPVHLGSMSTCVRTQAKIHEGKLKPGDVLVTNHPSYGGT 842
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -2
Query: 375 RSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKM 253
+SG+ +T+ + +V I + +D +E LP LC K+
Sbjct: 378 KSGSRLLTRRLCAPSTNIVEINNRLDLVEKFKLLPELCSKV 418
>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 372
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -1
Query: 244 ILHCQGQVPPRCTCTPQDMHMLSSNKC 164
+LHC + RC C P+++ + S++ C
Sbjct: 333 LLHCPRK--GRCFCKPEEIDLSSNSSC 357
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -1
Query: 619 DGPKYIPHPXPEGCTSASSESAPSDQPIYPDTGQDYS*GPFQ 494
D KYIP P ASS PS P +T ++ P +
Sbjct: 190 DPKKYIPETVPSTPQPASSLPIPSSPPAALETEENVDSQPME 231
>SPAC1851.03 |ckb1||CK2 family regulatory subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = -2
Query: 513 TAKGLFKILEKYR 475
TA+GL+K+LEKY+
Sbjct: 94 TAQGLYKMLEKYK 106
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,282,998
Number of Sequences: 5004
Number of extensions: 39938
Number of successful extensions: 131
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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