Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13b21
(664 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 206 1e-53
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 194 4e-50
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 80 1e-15
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 60 2e-09
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 54 7e-08
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 48 8e-06
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.026
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 6.8
AF016452-10|AAB66019.1| 620|Caenorhabditis elegans Gastrulation... 27 9.0
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 206 bits (503), Expect = 1e-53
Identities = 99/198 (50%), Positives = 133/198 (67%)
Frame = -2
Query: 663 GQGIQPTRDLSRFCKMAPSIFRIXRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 484
GQ IQP +D++RF K P R+ RQ A+LQ+RLKVPP INQF LD +A+ FK+L+
Sbjct: 43 GQDIQPKKDVTRFVKW-PKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLD 101
Query: 483 KYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKKKAQLVVIAHD 304
KYRPE+ KRPNT+R G NT+T+LVE ++AQLV+IAHD
Sbjct: 102 KYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVETRRAQLVLIAHD 161
Query: 303 VDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVE 124
V+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +V D+++ +K+VE
Sbjct: 162 VNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVE 221
Query: 123 AIKTNFNERYEELRKXLG 70
+ NF+ER+EE+RK G
Sbjct: 222 TVNNNFSERHEEIRKHWG 239
Score = 34.7 bits (76), Expect = 0.059
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = -3
Query: 74 WGGGVLGNKSNARIAKLEKAKARE 3
WGGGV+ KS+A+ K+E+A+AR+
Sbjct: 238 WGGGVMSAKSDAKKLKIERARARD 261
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 194 bits (474), Expect = 4e-50
Identities = 98/198 (49%), Positives = 132/198 (66%)
Frame = -2
Query: 663 GQGIQPTRDLSRFCKMAPSIFRIXRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 484
GQ IQP +D++RF K P R+ RQ A+LQ+RLKVPP INQF LD +A+ FK+L+
Sbjct: 43 GQDIQPKKDVTRFVKW-PKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLD 101
Query: 483 KYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKKKAQLVVIAHD 304
KYRPE+ RPNT+R G NT+T+LVE ++AQLV+IAHD
Sbjct: 102 KYRPESTEVTK--------------------RPNTVRHGVNTITRLVETRRAQLVLIAHD 141
Query: 303 VDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVE 124
V+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +V D+++ +K+VE
Sbjct: 142 VNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVE 201
Query: 123 AIKTNFNERYEELRKXLG 70
+ NF+ER+EE+RK G
Sbjct: 202 TVNNNFSERHEEIRKHWG 219
Score = 34.7 bits (76), Expect = 0.059
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = -3
Query: 74 WGGGVLGNKSNARIAKLEKAKARE 3
WGGGV+ KS+A+ K+E+A+AR+
Sbjct: 218 WGGGVMSAKSDAKKLKIERARARD 241
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 80.2 bits (189), Expect = 1e-15
Identities = 37/66 (56%), Positives = 48/66 (72%)
Frame = -2
Query: 663 GQGIQPTRDLSRFCKMAPSIFRIXRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 484
GQ IQP +D++RF K P R+ RQ A+LQ+RLKVPP INQF LD +A+ FK+L+
Sbjct: 146 GQDIQPKKDVTRFVKW-PKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLD 204
Query: 483 KYRPET 466
KYRPE+
Sbjct: 205 KYRPES 210
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 59.7 bits (138), Expect = 2e-09
Identities = 28/48 (58%), Positives = 34/48 (70%)
Frame = -2
Query: 663 GQGIQPTRDLSRFCKMAPSIFRIXRQKAVLQRRLKVPPPINQFTQTLD 520
GQ IQP +D++RF K P R+ RQ A+LQ+RLKVPP INQF LD
Sbjct: 146 GQDIQPKKDVTRFVKW-PKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 54.4 bits (125), Expect = 7e-08
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Frame = -2
Query: 378 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 205
++ G N TK + + ++++V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACG 94
Query: 204 VHRKTCTCLALTNVESGDRASFSKVVEAIK 115
V R N S ++ K+ E ++
Sbjct: 95 VTRPVIAASITQNEGSQLKSQIQKIKEDVE 124
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 47.6 bits (108), Expect = 8e-06
Identities = 20/89 (22%), Positives = 44/89 (49%)
Frame = -2
Query: 381 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 202
T+R G V K + + + + ++A +V PI++ +P +C + +PY + + +LG V
Sbjct: 68 TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAV 127
Query: 201 HRKTCTCLALTNVESGDRASFSKVVEAIK 115
+ + L + + +V EA++
Sbjct: 128 GHRRPSILIFVKPSGDFKELYDEVAEALR 156
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.026
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = +1
Query: 424 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 543
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = -3
Query: 551 LRSTNLPRHWTRLQLRA 501
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
>AF016452-10|AAB66019.1| 620|Caenorhabditis elegans Gastrulation
defective protein 1 protein.
Length = 620
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 116 LMASTTFEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLTMQYGTPI 256
L+ T E +S D F V V TS+P +D P T+Q+ P+
Sbjct: 361 LLVKTGLENAFKSTDCGFSPRAEV-VFTGTSSPNKDTPGTLQFFDPM 406
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,162,529
Number of Sequences: 27780
Number of extensions: 246848
Number of successful extensions: 739
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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